Internal validation study to assess the SeqStudio™ for human identification's performance.

DNA typing Forensic validation studies GlobalFiler™ IQC Amplification Kit SeqStudio™ Genetic Analyzer for HID Short tandem repeats (STRs)

Journal

International journal of legal medicine
ISSN: 1437-1596
Titre abrégé: Int J Legal Med
Pays: Germany
ID NLM: 9101456

Informations de publication

Date de publication:
Jul 2023
Historique:
received: 14 02 2023
accepted: 09 05 2023
medline: 9 6 2023
pubmed: 17 5 2023
entrez: 17 5 2023
Statut: ppublish

Résumé

The SeqStudio™ for human identification (HID) is a new benchtop capillary electrophoresis (CE) platform recently developed by Applied Biosystems for genotyping and sequencing short tandem repeat (STR) fragments. Compared to the previous series of CE systems developed by this maker, it is more compact and easier to use. Moreover, by allowing the detection of 4 to 8 fluorescent dyes, it seems to be fully compatible with the different kits of autosomal and gonosomal STR markers usually used in forensic genetics, which are available in trade and supplied by various manufacturers. However, being a new CE model, before its routine use in forensic genetics applications, it should undergo appropriate analytical validation studies in its own laboratories to understand its potential and limitations. A series of experiments on DNA samples coming from cell line controls, using the GlobalFiler™ IQC Amplification Kit, were carried out to meet this purpose. The SeqStudio™ Genetic Analyzer for HID's findings on genotyping reproducibility (precision and accuracy of sizing), sensitivity, signal variability between dyes (intra- and inter-color channel balance), and stutter ratios are reported. These findings confirm the validity of this new CE system and its capability to generate reliable results.

Identifiants

pubmed: 37195354
doi: 10.1007/s00414-023-03016-y
pii: 10.1007/s00414-023-03016-y
pmc: PMC10247830
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

971-980

Commentaires et corrections

Type : ErratumIn

Informations de copyright

© 2023. The Author(s).

Références

Forensic Sci Int. 2006 Jan 27;156(2-3):242-4
pubmed: 16002250
Forensic Sci Int Genet. 2015 Jul;17:33-34
pubmed: 25797140
Nucleic Acids Res. 1996 Jul 15;24(14):2807-12
pubmed: 8759015
J Forensic Sci. 2001 May;46(3):647-60
pubmed: 11373004
Forensic Sci Int Genet. 2018 Jul;35:50-56
pubmed: 29660688

Auteurs

Giulia Soldati (G)

Department of Diagnostics and Public Health, Section of Forensic Medicine, Forensic Genetics Lab, University of Verona, Verona, Italy. giulia.soldati_02@univr.it.

Stefania Turrina (S)

Department of Diagnostics and Public Health, Section of Forensic Medicine, Forensic Genetics Lab, University of Verona, Verona, Italy.

Chiara Saccardo (C)

Department of Diagnostics and Public Health, Section of Forensic Medicine, Forensic Genetics Lab, University of Verona, Verona, Italy.

Francesco Ausania (F)

Department of Diagnostics and Public Health, Section of Forensic Medicine, Forensic Genetics Lab, University of Verona, Verona, Italy.

Domenico De Leo (D)

Department of Diagnostics and Public Health, Section of Forensic Medicine, Forensic Genetics Lab, University of Verona, Verona, Italy.

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Classifications MeSH