Genome-wide identification and expression pattern analysis of the MATE gene family in carmine radish (Raphanus sativus L.).

Raphanus / metabolism Cadmium / metabolism Carmine / metabolism Genes, Plant Multigene Family Gene Expression Regulation, Plant
Cd stress MATE gene family Radish (Raphanus sativus L.) The expression pattern

Journal

Gene
ISSN: 1879-0038
Titre abrégé: Gene
Pays: Netherlands
ID NLM: 7706761

Informations de publication

Date de publication:
15 Dec 2023
Historique:
received: 28 06 2023
revised: 09 08 2023
accepted: 22 08 2023
medline: 25 9 2023
pubmed: 26 8 2023
entrez: 25 8 2023
Statut: ppublish

Résumé

Carmine radish (Raphanus sativus L.) is famousforcontaininganaturalredpigment(redradishpigment) that grown in Fuling, Chongqing City, China. MATE (multidrug and toxic compound extrusion), as an integral member of the multidrug efflux transporter family, has various functions in plants. However, noinformationhasbeenavailableaboutcharacteristicsoftheMATEgenefamily in carmine radish. In this study, total of 85 candidate MATE gene family members classifiedinto 4 groups were identified and foundtobewidelyandrandomlydistributedindifferent genome. Synteny analysis revealed that twenty-one segmental and ten tandem duplications acted as important regulators for the expansion of RsMATE genes. The Ka/Ks ratios of RsMATE indicated that RsMATE may have undergone intense purification in the radish genome. Cis-acting element analysis of RsMATE in the promoter region indicated that RsMATE were mainly related to the abiotic stress response and phytohormone. Quantitative real-time polymerase chain reaction (qRT-PCR) showed that RsMATE40-b, RsMATE16-b and RsMATE13-a genes were significantly expressed under ABA (abscisic acid) and NaCl stress treatments respectively. In addition, the expression patterns of fifteen key RsMATE genes were investigated in 'XCB' (Xichangbai) and 'HX' (Hongxin) roots under Cadmium (Cd) stress for different treatment times using qRT-PCR, of those, RsMATE49-b, RsMATE33 and RsMATE26 transcripts were strongly altered at different time points in XCB responsive to Cd stress,compared to HX. This study will provide valuable insights for studying the functional characterization of the MATE gene in carmine radish and other plants.

Identifiants

DOI: 10.1016/j.gene.2023.147734 PMID: 37625557
pubmed: 37625557
pii: S0378-1119(23)00575-9
doi: 10.1016/j.gene.2023.147734
pii:
doi:

Substances chimiques

Cadmium 00BH33GNGH
Carmine CID8Z8N95N

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

147734

Informations de copyright

Copyright © 2023 Elsevier B.V. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Zhangfei Zheng (Z)

School of Biological and Food Engineering, Chongqing Three Gorges University, WanZhou, 404100 Chongqing, China; School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Fuling, 408100 Chongqing, China.

Jian Gao (J)

School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Fuling, 408100 Chongqing, China. Electronic address: gaojian_genomics@163.com.

Chuanyi Wang (C)

School of Biological and Food Engineering, Chongqing Three Gorges University, WanZhou, 404100 Chongqing, China; School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Fuling, 408100 Chongqing, China.

Hua Peng (H)

Research Centre for Tourism Agriculture Development, Sichuan Tourism College, Chengdu 610100, Sichuan, China.

Jing Zeng (J)

School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Fuling, 408100 Chongqing, China.

Fabo Chen (F)

School of Advanced Agriculture and Bioengineering, Yangtze Normal University, Fuling, 408100 Chongqing, China.

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Viridiplantae › Streptophyta › Embryophyta › Tracheobionta › Magnoliopsida › Brassicaceae › Raphanus › Genome-wide identification and expression...
questionsmedicales.fr › Produits chimiques inorganiques › Métaux › Métaux lourds › Cadmium › Genome-wide identification and expression...
questionsmedicales.fr › Composés polycycliques › Hydrocarbures aromatiques polycycliques › Anthracènes › Anthraquinones › Carmin › Genome-wide identification and expression...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome végétal › Gènes de plante › Genome-wide identification and expression...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Composants de génome › Gènes › Famille multigénique › Genome-wide identification and expression...
questionsmedicales.fr › Phénomènes génétiques › Régulation de l'expression des gènes › Régulation de l'expression des gènes végétaux › Genome-wide identification and expression...