De novo design of monomeric helical bundles for pH-controlled membrane lysis.

coiled-coil endosomal escape membrane disruption pH responsive protein design

Journal

Protein science : a publication of the Protein Society
ISSN: 1469-896X
Titre abrégé: Protein Sci
Pays: United States
ID NLM: 9211750

Informations de publication

Date de publication:
11 2023
Historique:
revised: 10 07 2023
received: 10 05 2023
accepted: 24 08 2023
medline: 30 10 2023
pubmed: 27 8 2023
entrez: 26 8 2023
Statut: ppublish

Résumé

Targeted intracellular delivery via receptor-mediated endocytosis requires the delivered cargo to escape the endosome to prevent lysosomal degradation. This can in principle be achieved by membrane lysis tightly restricted to endosomal membranes upon internalization to avoid general membrane insertion and lysis. Here, we describe the design of small monomeric proteins with buried histidine containing pH-responsive hydrogen bond networks and membrane permeating amphipathic helices. Of the 30 designs that were experimentally tested, all expressed in Escherichia coli, 13 were monomeric with the expected secondary structure, and 4 designs disrupted artificial liposomes in a pH-dependent manner. Mutational analysis showed that the buried histidine hydrogen bond networks mediate pH-responsiveness and control lysis of model membranes within a very narrow range of pH (6.0-5.5) with almost no lysis occurring at neutral pH. These tightly controlled lytic monomers could help mediate endosomal escape in designed targeted delivery platforms.

Identifiants

pubmed: 37632837
doi: 10.1002/pro.4769
pmc: PMC10578055
doi:

Substances chimiques

Histidine 4QD397987E
Liposomes 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

e4769

Subventions

Organisme : NIAID NIH HHS
ID : R01 AI165808
Pays : United States
Organisme : Howard Hughes Medical Institute
Pays : United States

Informations de copyright

© 2023 The Authors. Protein Science published by Wiley Periodicals LLC on behalf of The Protein Society.

Références

Protein Sci. 2018 Jan;27(1):293-315
pubmed: 29067766
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):235-42
pubmed: 21460441
J Struct Biol. 2007 Jan;157(1):38-46
pubmed: 16859925
Int J Pharm. 2021 May 15;601:120556
pubmed: 33798688
Adv Exp Med Biol. 1987;225:189-98
pubmed: 2839960
Nat Methods. 2022 Jun;19(6):679-682
pubmed: 35637307
Nat Chem Biol. 2022 Sep;18(9):999-1004
pubmed: 35836017
Nature. 2016 Oct 20;538(7625):329-335
pubmed: 27626386
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674
pubmed: 19461840
J Struct Biol. 1996 Jan-Feb;116(1):71-6
pubmed: 8742726
Bioconjug Chem. 2021 May 19;32(5):950-957
pubmed: 33861579
J Biol Chem. 2001 Sep 21;276(38):35714-22
pubmed: 11473117
Nat Biotechnol. 2015 Sep;33(9):941-51
pubmed: 26348965
Biomaterials. 2009 Apr;30(10):1954-61
pubmed: 19138797
J Mol Biol. 2011 Jan 28;405(4):1079-100
pubmed: 20932976
PLoS One. 2011;6(6):e20161
pubmed: 21731610
Proc Natl Acad Sci U S A. 2017 Oct 10;114(41):10852-10857
pubmed: 28973862
Nat Rev Genet. 2020 Apr;21(4):255-272
pubmed: 32042148
Proc Natl Acad Sci U S A. 2011 Nov 22;108(47):18949-53
pubmed: 22065763
Science. 2017 Dec 15;358(6369):1461-1466
pubmed: 29242347
Methods Mol Biol. 2018;1836:261-279
pubmed: 30151578
Nature. 2021 Aug;596(7873):583-589
pubmed: 34265844
Nature. 1982 Sep 23;299(5881):371-4
pubmed: 7110359
Bioconjug Chem. 2019 Feb 20;30(2):263-272
pubmed: 30452233
Biointerphases. 2017 Oct 26;12(5):05G605
pubmed: 29078702
Science. 2022 Oct 7;378(6615):49-56
pubmed: 36108050
Chem Commun (Camb). 2021 Feb 15;57(12):1434-1437
pubmed: 33514953
J Virol. 2005 Feb;79(4):1992-2000
pubmed: 15681401
Science. 2014 Oct 24;346(6208):481-485
pubmed: 25342806
Virology. 2010 Jun 20;402(1):11-9
pubmed: 20409568
ACS Chem Biol. 2015 Apr 17;10(4):1082-93
pubmed: 25630033
J Struct Biol. 2005 Oct;152(1):36-51
pubmed: 16182563
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32
pubmed: 15572765
Science. 2016 May 6;352(6286):680-7
pubmed: 27151862
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21
pubmed: 20124702
Biochim Biophys Acta. 2015 Apr;1848(4):951-7
pubmed: 25572997
J Mol Biol. 1984 Oct 15;179(1):125-42
pubmed: 6502707
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):125-32
pubmed: 20124692
J Mol Biol. 2011 Jan 14;405(2):607-18
pubmed: 21073878
J Chem Theory Comput. 2018 May 8;14(5):2751-2760
pubmed: 29652499
Biochemistry. 1986 Apr 22;25(8):2231-7
pubmed: 3754765
J Chem Theory Comput. 2017 Jun 13;13(6):3031-3048
pubmed: 28430426
Acc Chem Res. 2016 Jun 21;49(6):1130-8
pubmed: 27187572
J Struct Biol. 2005 Jul;151(1):41-60
pubmed: 15890530
Nat Methods. 2017 Apr;14(4):331-332
pubmed: 28250466
Phys Chem Chem Phys. 2012 Dec 5;14(45):15739-51
pubmed: 23093307
Science. 2019 May 17;364(6441):658-664
pubmed: 31097662
Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2017 Sep;9(5):
pubmed: 28160452
Proteins. 2021 Apr;89(4):436-449
pubmed: 33249652
Protein Expr Purif. 2005 May;41(1):207-34
pubmed: 15915565
J Phys Chem B. 2015 Dec 31;119(52):15844-7
pubmed: 26636175
J Cell Sci. 2018 Aug 3;131(15):
pubmed: 30076240
Nat Chem. 2017 Aug;9(8):751-761
pubmed: 28754944
Protein Sci. 2023 Nov;32(11):e4769
pubmed: 37632837

Auteurs

Nicolas Goldbach (N)

Institute for Protein Design, University of Washington, Seattle, Washington, USA.
Molecular Life Sciences, Technical University of Munich, Munich, Germany.

Issa Benna (I)

Institute for Protein Design, University of Washington, Seattle, Washington, USA.
Department of Bioengineering, University of Washington, Seattle, Washington, USA.

Basile I M Wicky (BIM)

Institute for Protein Design, University of Washington, Seattle, Washington, USA.
Department of Biochemistry, University of Washington, Seattle, Washington, USA.

Jacob T Croft (JT)

Department of Medicinal Chemistry, University of Washington, Seattle, Washington, USA.

Lauren Carter (L)

Institute for Protein Design, University of Washington, Seattle, Washington, USA.
Department of Biochemistry, University of Washington, Seattle, Washington, USA.

Asim K Bera (AK)

Institute for Protein Design, University of Washington, Seattle, Washington, USA.
Department of Biochemistry, University of Washington, Seattle, Washington, USA.

Hannah Nguyen (H)

Institute for Protein Design, University of Washington, Seattle, Washington, USA.
Department of Biochemistry, University of Washington, Seattle, Washington, USA.

Alex Kang (A)

Institute for Protein Design, University of Washington, Seattle, Washington, USA.
Department of Biochemistry, University of Washington, Seattle, Washington, USA.

Banumathi Sankaran (B)

Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, California, USA.

Erin C Yang (EC)

Institute for Protein Design, University of Washington, Seattle, Washington, USA.
Department of Biochemistry, University of Washington, Seattle, Washington, USA.
Biological Physics, Structure and Design Graduate Program, University of Washington, Seattle, Washington, USA.

Kelly K Lee (KK)

Department of Medicinal Chemistry, University of Washington, Seattle, Washington, USA.
Biological Physics, Structure and Design Graduate Program, University of Washington, Seattle, Washington, USA.
Department of Microbiology, University of Washington, Seattle, Washington, USA.

David Baker (D)

Institute for Protein Design, University of Washington, Seattle, Washington, USA.
Department of Biochemistry, University of Washington, Seattle, Washington, USA.
Howard Hughes Medical Institute, University of Washington, Seattle, Washington, USA.

Articles similaires

Aspergillus Hydrogen-Ion Concentration Coculture Techniques Secondary Metabolism Streptomyces rimosus
Soil Charcoal Nutrients Manure Nitrogen
Soil Pollutants Cadmium Arsenic Soil Microbiology Iron
Anthraquinones Kinetics Water Purification Adsorption Thermodynamics

Classifications MeSH