Host phylogeny shapes viral transmission networks in an island ecosystem.
Journal
Nature ecology & evolution
ISSN: 2397-334X
Titre abrégé: Nat Ecol Evol
Pays: England
ID NLM: 101698577
Informations de publication
Date de publication:
Nov 2023
Nov 2023
Historique:
received:
12
12
2022
accepted:
04
08
2023
medline:
8
11
2023
pubmed:
8
9
2023
entrez:
7
9
2023
Statut:
ppublish
Résumé
Virus transmission between host species underpins disease emergence. Both host phylogenetic relatedness and aspects of their ecology, such as species interactions and predator-prey relationships, may govern rates and patterns of cross-species virus transmission and hence zoonotic risk. To address the impact of host phylogeny and ecology on virus diversity and evolution, we characterized the virome structure of a relatively isolated island ecological community in Fiordland, New Zealand, that are linked through a food web. We show that phylogenetic barriers that inhibited cross-species virus transmission occurred at the level of host phyla (between the Chordata, Arthropoda and Streptophyta) as well as at lower taxonomic levels. By contrast, host ecology, manifest as predator-prey interactions and diet, had a smaller influence on virome composition, especially at higher taxonomic levels. The virus-host community comprised a 'small world' network, in which hosts with a high diversity of viruses were more likely to acquire new viruses, and generalist viruses that infect multiple hosts were more likely to infect additional species compared to host specialist viruses. Such a highly connected ecological community increases the likelihood of cross-species virus transmission, particularly among closely related species, and suggests that host generalist viruses present the greatest risk of disease emergence.
Identifiants
pubmed: 37679456
doi: 10.1038/s41559-023-02192-9
pii: 10.1038/s41559-023-02192-9
pmc: PMC10627826
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1834-1843Subventions
Organisme : Department of Education and Training | Australian Research Council (ARC)
ID : FL170100022
Investigateurs
Jodie Crane
(J)
Galen Davitt
(G)
Daryl Eason
(D)
Petrus Hedman
(P)
Bronnie Jeynes
(B)
Scott Latimer
(S)
Sarah Little
(S)
Michael Mitchell
(M)
Jake Osborne
(J)
Brodie Philp
(B)
Alyssa Salton
(A)
Lydia Uddstrom
(L)
Deidre Vercoe
(D)
Alex Webster
(A)
Informations de copyright
© 2023. The Author(s).
Références
Nat Ecol Evol. 2018 Jan;2(1):94-99
pubmed: 29158553
Nature. 1998 Jun 4;393(6684):440-2
pubmed: 9623998
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Bioinformatics. 2019 Feb 1;35(3):526-528
pubmed: 30016406
Annu Rev Virol. 2022 Sep 29;9(1):173-192
pubmed: 35704744
Trends Microbiol. 2020 Mar;28(3):165-175
pubmed: 31744665
Science. 2010 Aug 6;329(5992):676-9
pubmed: 20689015
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12913-6
pubmed: 12235367
Mol Biol Evol. 2015 Jan;32(1):268-74
pubmed: 25371430
Mol Biol Evol. 2009 Jan;26(1):143-53
pubmed: 18922760
Nature. 2006 Jul 20;442(7100):259-64
pubmed: 16855581
ISME J. 2015 Jun;9(6):1352-64
pubmed: 25635642
Nat Microbiol. 2022 Aug;7(8):1312-1323
pubmed: 35902778
Parasit Vectors. 2020 Oct 28;13(1):536
pubmed: 33115505
Science. 2022 Mar 11;375(6585):1114-1115
pubmed: 35271309
Ecol Lett. 2015 Nov;18(11):1153-1162
pubmed: 26299267
Mol Ecol. 2018 Dec;27(24):5263-5278
pubmed: 30375075
FEMS Microbiol Ecol. 2017 Jan;93(1):
pubmed: 27702764
Virus Evol. 2021 Feb 04;7(1):veab005
pubmed: 33623709
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
J Virol. 2010 Jul;84(14):6955-65
pubmed: 20463061
Bioinformatics. 2015 May 15;31(10):1674-6
pubmed: 25609793
Nature. 2017 Jun 29;546(7660):646-650
pubmed: 28636590
PLoS One. 2013 Apr 22;8(4):e61217
pubmed: 23630581
Nat Commun. 2019 Mar 1;10(1):992
pubmed: 30824706
Proc Natl Acad Sci U S A. 2004 Mar 16;101(11):3747-52
pubmed: 15007165
PLoS One. 2008 Apr 30;3(4):e0002051
pubmed: 18446219
Ecology. 2009 Nov;90(11):2974-83
pubmed: 19967854
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Dec;76(6 Pt 2):066102
pubmed: 18233893
PLoS Pathog. 2011 Sep;7(9):e1002260
pubmed: 21966271
Nat Rev Microbiol. 2022 Jun;20(6):321-334
pubmed: 34983966
Genome Biol Evol. 2018 Mar 1;10(3):863-874
pubmed: 29608723
Nat Methods. 2015 Jan;12(1):59-60
pubmed: 25402007
Bioinformatics. 2009 Aug 1;25(15):1972-3
pubmed: 19505945
Genome Res. 2011 Oct;21(10):1616-25
pubmed: 21880779
Annu Rev Virol. 2019 Sep 29;6(1):119-139
pubmed: 31100994
PLoS Biol. 2021 Apr 20;19(4):e3001135
pubmed: 33878111
R Soc Open Sci. 2016 Jan 20;3(1):140536
pubmed: 26909160
PLoS Pathog. 2017 Feb 8;13(2):e1006215
pubmed: 28178344
Science. 2022 Apr 8;376(6589):156-162
pubmed: 35389782
J Theor Biol. 2002 Feb 7;214(3):405-12
pubmed: 11846598
BMC Bioinformatics. 2009 Dec 15;10:421
pubmed: 20003500