Genome-Wide Identification and Expression Analysis of the MADS Gene Family in Tulips (
MADS
cold response
gene expression
phylogeny
tulip
Journal
Genes
ISSN: 2073-4425
Titre abrégé: Genes (Basel)
Pays: Switzerland
ID NLM: 101551097
Informations de publication
Date de publication:
22 10 2023
22 10 2023
Historique:
received:
13
09
2023
revised:
17
10
2023
accepted:
20
10
2023
medline:
30
10
2023
pubmed:
28
10
2023
entrez:
28
10
2023
Statut:
epublish
Résumé
To investigate the cold response mechanism and low temperature regulation of flowering in tulips, this study identified 32 MADS-box transcription factor family members in tulips based on full-length transcriptome sequencing, named TgMADS1-TgMADS32. Phylogenetic analysis revealed that these genes can be divided into two classes: type I and type II. Structural analysis showed that
Identifiants
pubmed: 37895323
pii: genes14101974
doi: 10.3390/genes14101974
pmc: PMC10606154
pii:
doi:
Substances chimiques
MADS Domain Proteins
0
Transcription Factors
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Références
Genomics Proteomics Bioinformatics. 2010 Mar;8(1):77-80
pubmed: 20451164
Nat Rev Genet. 2013 May;14(5):360-6
pubmed: 23552219
Mol Biol Evol. 2002 Jun;19(6):801-14
pubmed: 12032236
Plant Physiol. 2010 Jun;153(2):728-40
pubmed: 20395452
BMC Plant Biol. 2009 Jan 12;9:5
pubmed: 19138429
Front Plant Sci. 2016 Sep 20;7:1390
pubmed: 27703461
Nature. 2000 Apr 13;404(6779):766-70
pubmed: 10783890
BMC Plant Biol. 2020 Oct 29;20(1):497
pubmed: 33121437
Acta Biochim Pol. 2001;48(2):351-8
pubmed: 11732606
Plant Cell. 1999 May;11(5):949-56
pubmed: 10330478
Ann Bot. 2007 Sep;100(3):603-19
pubmed: 17670752
Trends Ecol Evol. 2000 Apr;15(4):144-149
pubmed: 10717683
Nat Rev Genet. 2001 Mar;2(3):186-95
pubmed: 11256070
BMC Genomics. 2015 Mar 14;16:178
pubmed: 25881193
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
ScientificWorldJournal. 2007 Feb 19;7:268-79
pubmed: 17334618
Proc Natl Acad Sci U S A. 1999 Jun 22;96(13):7342-7
pubmed: 10377416
Trends Genet. 2002 Sep;18(9):486
pubmed: 12175810
BMC Plant Biol. 2019 Mar 19;19(1):106
pubmed: 30890145
J Exp Bot. 2000 Mar;51(344):587-94
pubmed: 10938815
Comput Biol Chem. 2019 Jun;80:341-350
pubmed: 31082717
Curr Opin Plant Biol. 2011 Feb;14(1):38-44
pubmed: 20884277
Gene. 2005 Mar 14;347(2):183-98
pubmed: 15777618
Mol Hortic. 2021 Dec 9;1(1):16
pubmed: 37789491
Proteins. 1997 Jul;28(3):405-20
pubmed: 9223186
PLoS One. 2017 Jul 25;12(7):e0181443
pubmed: 28742823
BMC Bioinformatics. 2007 Aug 09;8:298
pubmed: 17688688
Genome Inform. 2009 Oct;23(1):205-11
pubmed: 20180275
Biology (Basel). 2013 Sep 12;2(3):1150-64
pubmed: 24833059
Genes (Basel). 2021 Dec 07;12(12):
pubmed: 34946905
PLoS One. 2016 Oct 24;11(10):e0165075
pubmed: 27776173
Yi Chuan. 2007 Aug;29(8):1023-6
pubmed: 17681935
3 Biotech. 2021 Feb;11(2):108
pubmed: 33569264
Plant J. 2000 Feb;21(4):351-60
pubmed: 10758486
Front Plant Sci. 2013 Sep 23;4:377
pubmed: 24065980
Biol Chem. 1997 Oct;378(10):1079-101
pubmed: 9372178
Genome Biol Evol. 2018 Nov 1;10(11):3026-3037
pubmed: 30364940
New Phytol. 2000 Sep;147(3):505-517
pubmed: 33862938
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W369-73
pubmed: 16845028
Gene. 2015 Jan 25;555(2):277-90
pubmed: 25447908
Plant Physiol. 2017 Mar;173(3):1904-1919
pubmed: 28104719
Comput Appl Biosci. 1994 Apr;10(2):189-91
pubmed: 8019868
Nat Biotechnol. 2019 Apr;37(4):420-423
pubmed: 30778233
BMC Genomics. 2007 Jul 18;8:242
pubmed: 17640358
Plant Cell. 2013 Apr;25(4):1288-303
pubmed: 23613199
Nucleic Acids Res. 2019 Jul 2;47(W1):W636-W641
pubmed: 30976793
Comput Biol Chem. 2021 Feb;90:107424
pubmed: 33340990
Mol Biol Evol. 2010 May;27(5):1201-11
pubmed: 20080864
Plant Physiol. 2004 Aug;135(4):2207-19
pubmed: 15299121
Front Plant Sci. 2017 Mar 22;8:384
pubmed: 28382045
Nature. 1991 Sep 5;353(6339):31-7
pubmed: 1715520
New Phytol. 2008;178(3):544-58
pubmed: 18298432
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W5-9
pubmed: 18440982
Front Plant Sci. 2016 Jan 06;6:1193
pubmed: 26779227
BMC Plant Biol. 2014 Jul 02;14:179
pubmed: 24989161
Gene. 2001 Jan 10;262(1-2):1-13
pubmed: 11179662
Mol Phylogenet Evol. 2003 Dec;29(3):464-89
pubmed: 14615187