What's in my Pot? Six Colletotrichum Species Causing Anthracnose in Brazilian Pecan Orchards.

Carya illinoinensis Disease Management Plant Disease South America nuts

Journal

Current microbiology
ISSN: 1432-0991
Titre abrégé: Curr Microbiol
Pays: United States
ID NLM: 7808448

Informations de publication

Date de publication:
10 Feb 2024
Historique:
received: 15 08 2023
accepted: 19 01 2024
medline: 11 2 2024
pubmed: 10 2 2024
entrez: 10 2 2024
Statut: epublish

Résumé

Pecan (Carya illinoinensis) is one important exotic forest crop cultivated in South America, specifically in Brazil, Uruguay, and Argentina. However, diseases such as anthracnose, favored by high humidity conditions and high summer temperatures, make its cultivation difficult, causing important loss to pecan farmers. This study used morphological and molecular approaches to identify the Colletotrichum species causing anthracnose in pecan plantations in Southern Brazil. The isolates obtained from pecan fruits with anthracnose symptoms were grouped through quantitative morphological characteristics into three distinct morphotypes. Molecular analysis of nuclear genes allowed the identification of six species of Colletotrichum causing anthracnose in pecan: C. nymphaeae, C. fioriniae, C. gloeosporioides, C. siamense, C. kahawae, and C. karsti. Three of these species are reported for the first time as causal agents of anthracnose in pecan. Therefore, these results provide an important basis for the adoption and/or development of anthracnose management strategies in pecan orchards cultivated in southern Brazil and neighboring countries.

Identifiants

pubmed: 38340150
doi: 10.1007/s00284-024-03622-y
pii: 10.1007/s00284-024-03622-y
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

94

Subventions

Organisme : Conselho Nacional de Desenvolvimento Científico e Tecnológico
ID : 303673/2021-4
Organisme : Conselho Nacional de Desenvolvimento Científico e Tecnológico
ID : 408360/2018-6
Organisme : Coordenação de Aperfeiçoamento de Pessoal de Nível Superior
ID : 001

Informations de copyright

© 2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Références

Rivera-Rangel LR, Aguilera-Campos KI, García-Triana A, Ayala-Soto JG, Chavez-Flores D, Hernández-Ochoa L (2018) Comparison of oil content and fatty acids profile of western schley, wichita, and native pecan nuts cultured in Chihuahua, Mexico. J Lipids 2018. https://doi.org/10.1155/2018/4781345
International nut and dried fruit (INC) (2021) Nuts & Dried fruits statistical yearbook 2020 / 2021 (International Nut and Dried Fruit, Reus, Spain)
Rand FV (1914) Some disease of pecans. J Agric Res 1:303
Brenneman TB, Reilly CC (1989) Recent occurrence of pecan anthracnose caused by Glomerella cingulata. Plant Dis. 73. https://doi.org/10.1094/PD-73-0775D
Latham AJ, Bowen KL, Campbell HL (1995) Occurrence of Glomerella cingulata in pecan nut shucks and its association with fungal leaf scorch. Plant Dis 79:182–185. https://doi.org/10.1094/PD-79-0182
doi: 10.1094/PD-79-0182
Mantz G, Minhot R, Morrelli G, Maiale S (2010) First report of Colletotrichum gloeosporioides causing pecan anthracnose in Argentina. JPP 92
Pawan K (2011) Studies on anthracnose of pecan nut caused by Glomerella cingulata. Doctoral thesis. UHF, NAUNI, SOLAN
Zhang YB, Meng K, Shu JP, Zhang W, Wang HJ (2019) First report of anthracnose on pecan (Carya Illinoensis) caused by Colletotrichum nymphaeae in China. Plant Dis 103:1432. https://doi.org/10.1094/PDIS-11-18-1968-PDN
doi: 10.1094/PDIS-11-18-1968-PDN
Poletto T, Muniz MFB, Blume E, Fantinel SV, Reiniger LRS, Stefenon VM, Harakava R, Brioso PST, Poletto I (2019) First report of Colletotrichum nymphaeae causing anthracnose on Carya illinoinensis in Brazil. Plant Dis 103:3277–3277. https://doi.org/10.1094/PDIS-04-19-0896-PDN
doi: 10.1094/PDIS-04-19-0896-PDN
Oh JY, Heo JI, Lee DH (2021) First report of anthracnose on pecan (Carya illinoinensis) caused by Colletotrichum siamense in Korea. Plant Dis 105:3296. https://doi.org/10.1094/PDIS-12-20-2709-PDN
doi: 10.1094/PDIS-12-20-2709-PDN
Cannon PF, Damm U, Johnston PR, Weir BS (2012) Colletotrichum–current status and future directions. Stud Mycol 73:181–213. https://doi.org/10.3114%2Fsim0014
doi: 10.3114/sim0014 pubmed: 23136460 pmcid: 3458418
Sharma G, Shenoy BD (2016) Colletotrichum systematics: past, present and prospects. Mycosphere 7:1093–1102. https://doi.org/10.5943/mycosphere/si/2c/2
doi: 10.5943/mycosphere/si/2c/2
Wang YC, Hao XY, Wang L, Xiao B, Wang XC, Yang YJ (2016) Diverse Colletotrichum species cause anthracnose of tea plants (Camellia sinensis (L.) O. Kuntze) in China. Sci Rep 6:35287. https://doi.org/10.1038/srep35287
doi: 10.1038/srep35287 pubmed: 27782129 pmcid: 5080629
Huang F, Chen GQ, Hou X, Fu YS, Cai L, Hyde KD, Li HY (2013) Colletotrichum species associated with cultivated citrus in China. Fungal Divers 61:61–74. https://doi.org/10.1007/s13225-013-0232-y
doi: 10.1007/s13225-013-0232-y
Liu F, Tang G, Zheng X, Li Y, Sun X, Qi X, Zhou Y, Xu J, Chen H, Chang X, Zhang S, Zhang S (2016) Molecular and phenotypic characterization of Colletotrichum species associated with anthracnose disease in peppers from Sichuan Province, China. Sci Rep 6:32761. https://doi.org/10.1038/srep32761
doi: 10.1038/srep32761 pubmed: 27609555 pmcid: 5016793
Kuinchtner A, Buriol GA (2001) The climate of Rio Grande do sul state according to Köppen and Thornthwaite classification. Discip Sci 2:171–182
Fernandes MR (1993) Manual para laboratório de fitopatologia. Passo Fundo – RS: EMATER – CNPT. 128
Maguire JD (1962) Speed of germination-aid selection and evaluation for seedling emergence and vigor. Crop Sci 2:176–177. https://doi.org/10.2135/cropsci1962.0011183X000200020033x
doi: 10.2135/cropsci1962.0011183X000200020033x
Munsell Soil Color Company (2009) Munsell soil-color charts
Cruz CD (2013) Genes: a software package for analysis in experimental statistics and quantitative genetics. Acta Sci 35:271–276. https://doi.org/10.4025/actasciagron.v35i3.21251
doi: 10.4025/actasciagron.v35i3.21251
Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:39–40
Carbone I, Kohn LM (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91:553–556. https://doi.org/10.1080/00275514.1999.12061051
doi: 10.1080/00275514.1999.12061051
Templeton MD, Rikkerink EHA, Solon SL, Crowhurst RN (1992) Cloning and molecular characterization of the glyceraldehyde-3-phosphate dehydrogenase encoding gene and cDNA from the plant pathogenic fungus glomerella cingulata. Gene 122:225–230
doi: 10.1016/0378-1119(92)90055-T pubmed: 1452034
Woudenberg JH, Aveskamp MM, De Gruyter J, Spiers AG, Crous PW (2009) Multiple Didymella teleomorphs are linked to the Phoma clematidina morphotype. Persoonia 22:56–62. https://doi.org/10.3767%2F003158509X427808
doi: 10.3767/003158509X427808 pubmed: 20198138 pmcid: 2789541
Schmitz A, Riesner D (2006) Purification of nucleic acids by selective precipitation with polyethylene glycol 6000. Anal Biochem 354:311–313. https://doi.org/10.1016/j.ab.2006.03.014
doi: 10.1016/j.ab.2006.03.014 pubmed: 16725102
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95–98
Maddison WP, Maddison DR (2019) Mesquite: um sistema modular para análise evolutiva. Versão 3.61 ( http://www.mesquiteproject.org )
Kozlov AM, Darriba D, Flouri T, Morel B, Stamatakis A (2019) RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics35(21):4453–4455. https://doi.org/10.1093/bioinformatics/btz305
Zhang Y, Liu Y, Deng K, Ma L, Lv S, Zhang C, Xiao L (2023) First report of Colletotrichum plurivorum causing anthracnose on pecan (Carya illinoinensis) in China. Plant Dis 107:2547. https://doi.org/10.1094/PDIS-12-22-2774-PDN
doi: 10.1094/PDIS-12-22-2774-PDN
Munir M, Amsden B, Dixon E, Vaillancourt L, Gauthier NW (2016) Characterization of Colletotrichum species causing bitter rot of apple in Kentucky orchards. Plant Dis 100:2194–2203. https://doi.org/10.1094/PDIS-10-15-1144-RE
doi: 10.1094/PDIS-10-15-1144-RE pubmed: 30682908
Waller JM, Bridge PD, Black R, Hakiza G (1993) Characterization of the coffee berry disease pathogen, Colletotrichum Kahawae sp. nov. Mycol Res 97:989–994. https://doi.org/10.1016/S0953-7562(09)80867-8
doi: 10.1016/S0953-7562(09)80867-8
Garibaldi A, Gilardi G, Puglisi I, Cacciola SO, Gullino ML (2016) First report of leaf spot caused by Colletotrichum kahawae on cultivated rocket (Eruca sativa) in Italy. Plant Dis 100:1240–1240. https://doi.org/10.1094/PDIS-11-15-1243-PDN
doi: 10.1094/PDIS-11-15-1243-PDN
Rios JA, Pinho DB, Moreira WR, Pereira OL, Rodrigues FA (2015) First report of Colletotrichum karsti causing anthracnose on blueberry leaves in Brazil. Plant Dis 99:157–157. https://doi.org/10.1094/pdis-07-14-0717-pdn
doi: 10.1094/pdis-07-14-0717-pdn pubmed: 30699753
Velho AC, Stadnik MJ, Casanova L, Mondino P, Alaniz S (2014) First report of Colletotrichum karsti causing Glomerella leaf spot on apple in Santa Catarina State, Brazil. Plant Dis 98:157–157. https://doi.org/10.1094/pdis-05-13-0498-pdn
doi: 10.1094/pdis-05-13-0498-pdn pubmed: 30708587
Fantinel VS, Muniz MFB, Blume E, Araújo MM, Poletto T, da Silva TT, Dutra AF, Maciel CG, HARAKAVA R (2017) First Report of Colletotrichum siamense causing anthracnose on Acca sellowiana fruits in Brazil. Plant Dis 101:1035–1035. https://doi.org/10.1094/PDIS-01-17-0096-PDN
doi: 10.1094/PDIS-01-17-0096-PDN
Rabuske JE, Muniz MFB, Poletto T, Walker C, Blume E, Krahn JRT, Brun T, Harakava R (2018) First report of Colletotrichum gloeosporioides causing anthracnose spot on Cassia fistula in Brazil. Plant Dis 102:1172. https://doi.org/10.1094/PDIS-10-17-1592-PDN
doi: 10.1094/PDIS-10-17-1592-PDN
Varjas V, Kovács C, Lakatos T, Tóth T, Bujdosó G (2019) First report of walnut anthracnose caused by Colletotrichum fioriniae on English (Persian) walnut fruits in Hungary. Plant Dis 103:2964–2964. https://doi.org/10.1094/PDIS-02-19-0286-PDN
doi: 10.1094/PDIS-02-19-0286-PDN
Weir B, Johnston PR, Damm U (2012) The Colletotrichum gloeosporioides species complex. Stud Mycol 73:115–180. https://doi.org/10.3114/sim0011
doi: 10.3114/sim0011 pubmed: 23136459 pmcid: 3458417
Damm U, Cannon PF, Woudenberg JHC, Johnston PR, Weir BS, Tan YP, Shivas RG, Crous PW (2012a) The Colletotrichum boninense species complex. Stud Mycol 73:1–36. https://doi.org/10.3114%2Fsim0002
doi: 10.3114/sim0002 pubmed: 23136457 pmcid: 3458415
Damm U, Cannon PF, Woudenberg JHC, Crous PW (2012b) The Colletotrichum acutatum species complex. Stud Mycol 73:37–113. https://doi.org/10.3114%2Fsim0010
doi: 10.3114/sim0010 pubmed: 23136458 pmcid: 3458416
Shivas RG, Yu YPA (2009) Taxonomic re-assessment of Colletotrichum acutatum, introducing C. fioriniae comb. et stat. nov. and C. simmondsii sp. nov. Fungal Divers. 39:e122
Guginski-Piva CA, Bogo A, Gomes BR, Menon JK, Nodari RO, Welter LJ (2018) Morphological and molecular characterization of Colletotrichum nymphaeae and C. Fructicola associated with anthracnose symptoms of grape in Santa Catarina State, southern Brazil. JPDP 125:405–413. https://doi.org/10.1007/s41348-018-0176-2
doi: 10.1007/s41348-018-0176-2
Lazarotto M, Milanesi PM, Muniz MFB, Reiniger LRS, Beltrame R, Harakava R, Blume E (2014a) Morphological and molecular characterization of Fusarium spp. pathogenic to pecan trees in Brazil. Genet Mol 13:9390–9402. https://doi.org/10.4238/2014.november.11.5
doi: 10.4238/2014.november.11.5
Lazarotto M, Bovolini MP, Muniz MFB, Harakawa R, Reiniger LRS, Santos ÁFD (2014b) Identification and characterization of pathogenic pestalotiopsis species to pecan tree in Brazil. Pesqui Agropecu Bras 49:440–448. https://doi.org/10.1590/S0100-204X2014000600005
doi: 10.1590/S0100-204X2014000600005
Walker C, Muniz MFB, Rolim JM, Martins RRO, Rosenthal VC, Maciel CG, Mezzomo R, Reiniger LR (2016) Morphological and molecular characterization of Cladosporium cladosporioides species complex causing pecan tree leaf spot. Genet Mol Res 15:1–11. https://doi.org/10.4238/gmr.15038714
doi: 10.4238/gmr.15038714
Mezzomo R, Rolim JM, Poletto T, Rosenthal VC, Savian LG, Reiniger LRS, Muniz MFB (2018) Morphological and molecular characterization of Fusarium spp. pathogenic to Ilex paraguariensis. Cerne 24:209–218. https://doi.org/10.1590/01047760201824032535
doi: 10.1590/01047760201824032535
Hu MJ, Grabke A, Schnabel G (2015) Investigation of the Colletotrichum gloeosporioides species complex causing peach anthracnose in South Carolina. Plant Dis 99:797–805. https://doi.org/10.1094/PDIS-10-14-1076-RE
doi: 10.1094/PDIS-10-14-1076-RE pubmed: 30699535
Hassan O, Jeon JY, Chang T, Shin JS, Oh NK, LEE YS (2018) Molecular and morphological characterization of Colletotrichum species in the Colletotrichum gloeosporioides complex associated with persimmon anthracnose in South Korea. Plant Dis 102:1015–1024. https://doi.org/10.1094/pdis-10-17-1564-re
doi: 10.1094/pdis-10-17-1564-re pubmed: 30673381
Silva CBFBD, Michereff SJ (2013) Biology of Colletotrichum spp. and epidemiology of the anthracnose in tropical fruit trees. Revista Caatinga 26:130–138
Rovani FFM, Wollmann CA (2018) Análise sazonal e anual dos requisitos climáticos do cultivo da nogueira pecã (Carya illinoinensis) no Rio Grande do sul. GEOUSP Espaço E Tempo 22:191–209. https://doi.org/10.11606/issn.2179-0892.geousp.2018.122043
doi: 10.11606/issn.2179-0892.geousp.2018.122043

Auteurs

Tales Poletto (T)

Universidade Federal de Santa Maria, Santa Maria, RS, Brazil. talespoletto@gmail.com.
Universidade Federal de Santa Catarina, Florianópolis, SC, Brazil. talespoletto@gmail.com.

Yohan Fritsche (Y)

Universidade Federal de Santa Catarina, Florianópolis, SC, Brazil.

Vinícius Spolaor Fantinel (VS)

Universidade Federal de Santa Maria, Santa Maria, RS, Brazil.

Marlove Fátima Brião Muniz (MFB)

Universidade Federal de Santa Maria, Santa Maria, RS, Brazil.

Ricardo Harakava (R)

Instituto Biológico de São Paulo, São Paulo, SP, Brazil.

Valdir Marcos Stefenon (VM)

Universidade Federal de Santa Catarina, Florianópolis, SC, Brazil.

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