Unraveling the complex evolutionary features of the Cinnamomum camphora mitochondrial genome.
Cinnamomum camphora
Branch structure
Mitochondrial genome
Rearrangement
Repetitive sequence
Journal
Plant cell reports
ISSN: 1432-203X
Titre abrégé: Plant Cell Rep
Pays: Germany
ID NLM: 9880970
Informations de publication
Date de publication:
26 Jun 2024
26 Jun 2024
Historique:
received:
07
04
2024
accepted:
03
06
2024
medline:
26
6
2024
pubmed:
26
6
2024
entrez:
26
6
2024
Statut:
epublish
Résumé
We reported the mitochondrial genome of Cinnamomum camphora for the first time, revealing frequent rearrangement events in the non-coding regions of Magnoliids mitochondrial genomes. As one of the representative species in the Lauraceae family of Magnoliids, Cinnamomum camphora holds significant economic and ecological value. In this study, the mitochondrial genome (mitogenome) of C. camphora was complete assembled and annotated using PacBio HiFi sequencing. The C. camphora mitogenome is characterized by a branch structure, spans 900,894 bp, and contains 43 protein-coding genes (PCGs), 24 tRNAs, and 3 rRNAs. Most of these PCGs are under purifying selection, with only two (ccmFc and rps7) exhibiting signs of positive selection. The C. camphora mitogenome contains numerous repetitive sequences and intracellular gene transfers, with a total of 36 mitochondrial plastid DNAs, amounting to a combined length of 23,816 bp. Comparative analysis revealed that the non-coding regions of Magnoliids mitogenomes have undergone frequent rearrangements during evolution, but the coding sequences remain highly conserved (more than 98% similarity for protein-coding sequences). Furthermore, a maximum-likelihood phylogenetic tree was reconstructed based on 25 PCGs from 23 plant mitogenomes. The analysis supports the closest relationship between C. camphora and C. chekiangense, consistent with the APG IV classification system. This study elucidates the unique evolutionary features of the C. camphora mitogenome, which will provide valuable insights into the study of genetics and evolution of the family Lauraceae.
Identifiants
pubmed: 38922445
doi: 10.1007/s00299-024-03256-1
pii: 10.1007/s00299-024-03256-1
doi:
Substances chimiques
RNA, Transfer
9014-25-9
RNA, Ribosomal
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
183Subventions
Organisme : The National Key R&D Program of China
ID : 2022YFD2200603
Organisme : Ten Thousand People Plan of Science and Technology Innovation Leading Talent of Zhejiang, China
ID : 2022R52028
Organisme : The Natural Science Foundation of Jiangsu Province
ID : BK20220414
Organisme : The Natural Science Foundation of the Higher Education Institutions of Jiangsu Province
ID : 22KJB220003
Informations de copyright
© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.
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