Chloroplast genomes of Eriobotrya elliptica and an unknown wild loquat "YN-1".

Genome, Chloroplast Eriobotrya / genetics Phylogeny RNA Editing / genetics
Chloroplast genome Phylogeny RNA editing Wild loquat

Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
13 08 2024
Historique:
received: 07 04 2024
accepted: 09 08 2024
medline: 14 8 2024
pubmed: 14 8 2024
entrez: 13 8 2024
Statut: epublish

Résumé

The chloroplast genomes of wild loquat can help to determine their place in the history of evolution. Here, we sequenced and assembled two novel wild loquat's chloroplast genomes, one is Eriobotrya elliptica, and the other is an unidentified wild loquat, which we named "YN-1". Their sizes are 159,471 bp and 159,399 bp, respectively. We also assembled a cultivated loquat named 'JFZ', its chloroplast genome size is 159,156 bp. A comparative study was conducted with six distinct species of loquats, including five wild loquats and one cultivated loquat. The results showed that both E. elliptica and "YN-1" have 127 genes, one gene more than E. fragrans, which is psbK. Regions trnF-GAA-ndhJ, petG-trnP-UGG, and rpl32-trnL-UAG were found to exhibit high variability. It was discovered that there was a positive selection on rpl22 and rps12. RNA editing analysis found several chilling stress-specific RNA editing sites, especially in rpl2 gene. Phylogenetic analysis results showed that "YN-1" is closely related to E. elliptica, E. obovata and E. henryi.

Identifiants

DOI: 10.1038/s41598-024-69882-7 PMID: 39138300
pubmed: 39138300
doi: 10.1038/s41598-024-69882-7
pii: 10.1038/s41598-024-69882-7
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

18816

Subventions

Organisme : Fujian Provincial Natural Science Foundation Youth Project
ID : 2022J05254
Organisme : Putian University scientific research launch project
ID : 2022051
Organisme : Fujian Provincial University industry-university Cooperation project
ID : 2022N5006
Organisme : Putian University Putian City Science and Technology Plan Project
ID : 2021ZP09

Informations de copyright

© 2024. The Author(s).

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Auteurs

Zhicong Lin (Z)

College of Environmental and Biological Engineering, Fujian Provincial Key Laboratory of Ecology-Toxicological Effects and Control for Emerging Contaminants, Key Laboratory of Ecological Environment and Information Atlas (Putian University) Fujian Provincial University, Putian University, Putian, 351100, China.

Qing Guo (Q)

College of Environmental and Biological Engineering, Putian University, Putian, 351100, China.

Shiwei Ma (S)

College of Environmental and Biological Engineering, Fujian Provincial Key Laboratory of Ecology-Toxicological Effects and Control for Emerging Contaminants, Key Laboratory of Ecological Environment and Information Atlas (Putian University) Fujian Provincial University, Putian University, Putian, 351100, China.

Hailan Lin (H)

College of Environmental and Biological Engineering, Fujian Provincial Key Laboratory of Ecology-Toxicological Effects and Control for Emerging Contaminants, Key Laboratory of Ecological Environment and Information Atlas (Putian University) Fujian Provincial University, Putian University, Putian, 351100, China.

Shunquan Lin (S)

College of Environmental and Biological Engineering, Fujian Provincial Key Laboratory of Ecology-Toxicological Effects and Control for Emerging Contaminants, Key Laboratory of Ecological Environment and Information Atlas (Putian University) Fujian Provincial University, Putian University, Putian, 351100, China.

Shoukai Lin (S)

College of Environmental and Biological Engineering, Fujian Provincial Key Laboratory of Ecology-Toxicological Effects and Control for Emerging Contaminants, Key Laboratory of Ecological Environment and Information Atlas (Putian University) Fujian Provincial University, Putian University, Putian, 351100, China. linshoukai@ptu.edu.cn.

Jincheng Wu (J)

College of Environmental and Biological Engineering, Putian University, Putian, 351100, China. wjc2384@163.com.

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Classifications MeSH

questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome plastidique › Génome de chloroplaste › Chloroplast genomes of Eriobotrya elliptica...
questionsmedicales.fr › Eucaryotes › Viridiplantae › Streptophyta › Embryophyta › Tracheobionta › Magnoliopsida › Rosanae › Rosales › Rosaceae › Eriobotrya › Chloroplast genomes of Eriobotrya elliptica...
questionsmedicales.fr › Sciences de l'information › Phylogenèse › Chloroplast genomes of Eriobotrya elliptica...
questionsmedicales.fr › Phénomènes génétiques › Régulation de l'expression des gènes › Maturation post-transcriptionnelle des ARN › Édition des ARN › Chloroplast genomes of Eriobotrya elliptica...