Laura Eme

Affiliations

Unité d'Ecologie, Sistématique et Evolution, CNRS, Université Paris-Sud, France.

Publications (27)

Nephromyces Represents a Diverse and Novel Lineage of the Apicomplexa That Has Retained Apicoplasts.

Genome biology and evolution

Avec: Sergio A Muñoz-Gómez , Keira Durnin , Christopher Paight , Christopher E Lane , Mary B Saffo , Claudio H Slamovits

A natural toroidal microswimmer with a rotary eukaryotic flagellum.

Nature microbiology

Avec: Sebastian Hess , Andrew J Roger , Alastair G B Simpson

Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes.

Current biology : CB

Avec: Courtney W Stairs , Petr Táborský , Eric D Salomaki , Martin Kolisko , Tomáš Pánek , Miluše Hradilová , Čestmír Vlček , Jon Jerlström-Hultqvist , Andrew J Roger , Ivan Čepička

Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes.

Nature

Avec: Daniel Tamarit , Eva F Caceres , Courtney W Stairs , Valerie De Anda , Max E Schön , Kiley W Seitz , Nina Dombrowski , William H Lewis , Felix Homa , Jimmy H Saw , Jonathan Lombard , Takuro Nunoura , Wen-Jun Li , Zheng-Shuang Hua , Lin-Xing Chen , Jillian F Banfield , Emily St John , Anna-Louise Reysenbach , Matthew B Stott , Andreas Schramm , Kasper U Kjeldsen , Andreas P Teske , Brett J Baker , Thijs J G Ettema

The Oxymonad Genome Displays Canonical Eukaryotic Complexity in the Absence of a Mitochondrion.

Molecular biology and evolution

Avec: Anna Karnkowska , Sebastian C Treitli , Ondřej Brzoň , Lukáš Novák , Vojtěch Vacek , Petr Soukal , Lael D Barlow , Emily K Herman , Shweta V Pipaliya , Tomáš Pánek , David Žihala , Romana Petrželková , Anzhelika Butenko , Courtney W Stairs , Andrew J Roger , Marek Eliáš , Joel B Dacks , Vladimír Hampl

Asgard archaea capable of anaerobic hydrocarbon cycling.

Nature communications

Avec: Kiley W Seitz , Nina Dombrowski , Anja Spang , Jonathan Lombard , Jessica R Sieber , Andreas P Teske , Thijs J G Ettema , Brett J Baker

Molecular characterization of the conoid complex in Toxoplasma reveals its conservation in all apicomplexans, including Plasmodium species.

PLoS biology

Avec: Ludek Koreny , Mohammad Zeeshan , Konstantin Barylyuk , Eelco C Tromer , Jolien J E van Hooff , Declan Brady , Huiling Ke , Sara Chelaghma , David J P Ferguson , Rita Tewari , Ross F Waller

PhyloFisher: A phylogenomic package for resolving eukaryotic relationships.

PLoS biology

Avec: Alexander K Tice , David Žihala , Tomáš Pánek , Robert E Jones , Eric D Salomaki , Serafim Nenarokov , Fabien Burki , Marek Eliáš , Andrew J Roger , Antonis Rokas , Xing-Xing Shen , Jürgen F H Strassert , Martin Kolísko , Matthew W Brown

Expanded phylogeny of extremely halophilic archaea shows multiple independent adaptations to hypersaline environments.

Nature microbiology

Avec: Brittany A Baker , Ana Gutiérrez-Preciado , Álvaro Rodríguez Del Río , Charley G P McCarthy , Purificación López-García , Jaime Huerta-Cepas , Edward Susko , Andrew J Roger , David Moreira

Microbial Diversity and Open Questions about the Deep Tree of Life.

Genome biology and evolution

Avec: Daniel Tamarit

Lateral Gene Transfer Mechanisms and Pan-genomes in Eukaryotes.

Trends in parasitology

Avec: Shannon J Sibbald , John M Archibald , Andrew J Roger

Site-and-branch-heterogeneous analyses of an expanded dataset favour mitochondria as sister to known Alphaproteobacteria.

Nature ecology & evolution

Avec: Sergio A Muñoz-Gómez , Edward Susko , Kelsey Williamson , Claudio H Slamovits , David Moreira , Purificación López-García , Andrew J Roger

Chlamydial contribution to anaerobic metabolism during eukaryotic evolution.

Science advances

Avec: Courtney W Stairs , Jennah E Dharamshi , Daniel Tamarit , Steffen L Jørgensen , Anja Spang , Thijs J G Ettema

Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism.

Nature microbiology

Avec: Anja Spang , Courtney W Stairs , Nina Dombrowski , Jonathan Lombard , Eva F Caceres , Chris Greening , Brett J Baker , Thijs J G Ettema

The Mastigamoeba balamuthi Genome and the Nature of the Free-Living Ancestor of Entamoeba.

Molecular biology and evolution

Avec: Vojtěch Žárský , Vladimír Klimeš , Jan Pačes , Čestmír Vlček , Miluše Hradilová , Vladimír Beneš , Eva Nývltová , Ivan Hrdý , Jan Pyrih , Jan Mach , Lael Barlow , Courtney W Stairs , Neil Hall , Marek Eliáš , Joel B Dacks , Andrew Roger , Jan Tachezy

Genomics of Preaxostyla Flagellates Illuminates the Path Towards the Loss of Mitochondria.

PLoS genetics

Avec: Lukáš V F Novák , Sebastian C Treitli , Jan Pyrih , Paweł Hałakuc , Shweta V Pipaliya , Vojtěch Vacek , Ondřej Brzoň , Petr Soukal , Joel B Dacks , Anna Karnkowska , Marek Eliáš , Vladimír Hampl

A closed Candidatus Odinarchaeum chromosome exposes Asgard archaeal viruses.

Nature microbiology

Avec: Daniel Tamarit , Eva F Caceres , Mart Krupovic , Reindert Nijland , Nicholas P Robinson , Thijs J G Ettema

Extremely acidic proteomes and metabolic flexibility in bacteria and highly diversified archaea thriving in geothermal chaotropic brines.

Nature ecology & evolution

Avec: Ana Gutiérrez-Preciado , Bledina Dede , Brittany A Baker , David Moreira , Purificación López-García

GTRpmix: A linked general-time reversible model for profile mixture models.

Molecular biology and evolution

Avec: Hector Banos , Thomas K F Wong , Justin Daneau , Edward Susko , Bui Quang Minh , Robert Lanfear , Matthew W Brown , Andrew J Roger

PhyloMagnet: fast and accurate screening of short-read meta-omics data using gene-centric phylogenetics.

Bioinformatics (Oxford, England)

Avec: Max E Schön , Thijs J G Ettema

Marine Sediments Illuminate Chlamydiae Diversity and Evolution.

Current biology : CB

Avec: Jennah E Dharamshi , Daniel Tamarit , Courtney W Stairs , Joran Martijn , Felix Homa , Steffen L Jørgensen , Anja Spang , Thijs J G Ettema

TreeTuner: A pipeline for minimizing redundancy and complexity in large phylogenetic datasets.

STAR protocols

Avec: Xi Zhang , Yining Hu , Shinichiro Maruyama , Robert J M Eveleigh , Bruce A Curtis , Shannon J Sibbald , Julia F Hopkins , Gina V Filloramo , Klaas J van Wijk , John M Archibald

Independent Size Expansions and Intron Proliferation in Red Algal Plastid and Mitochondrial Genomes.

Genome biology and evolution

Avec: Fabian van Beveren , Purificación López-García , Maria Ciobanu , David Moreira

Create, Analyze, and Visualize Phylogenomic Datasets Using PhyloFisher.

Current protocols

Avec: Robert E Jones , Alexander K Tice , Marek Eliáš , Martin Kolísko , Serafim Nenarokov , Tomáš Pánek , Antonis Rokas , Eric Salomaki , Jürgen F H Strassert , Xing-Xing Shen , David Žihala , Matthew W Brown

One high quality genome and two transcriptome datasets for new species of Mantamonas, a deep-branching eukaryote clade.

Scientific data

Avec: Jazmin Blaz , Luis Javier Galindo , Aaron A Heiss , Harpreet Kaur , Guifré Torruella , Ashley Yang , L Alexa Thompson , Alexander Filbert , Sally Warring , Apurva Narechania , Takashi Shiratori , Ken-Ichiro Ishida , Joel B Dacks , Purificación López-García , David Moreira , Eunsoo Kim ,

Phylogenetic reconciliation: making the most of genomes to understand microbial ecology and evolution.

The ISME journal

Avec: Tom A Williams , Adrian A Davin , Lénárd L Szánthó , Alexandros Stamatakis , Noah A Wahl , Ben J Woodcroft , Rochelle M Soo , Paul O Sheridan , Cecile Gubry-Rangin , Anja Spang , Philip Hugenholtz , Gergely J Szöllősi

A gene-rich mitochondrion with a unique ancestral protein transport system.

Current biology : CB

Avec: David Moreira , Jazmin Blaz , Eunsoo Kim ,

Réseau de co-auteurs

Andrew J Roger 8 collaborations

Courtney W Stairs 7 collaborations

Thijs J G Ettema 7 collaborations

David Moreira 6 collaborations

Daniel Tamarit 5 collaborations

Marek Eliáš 5 collaborations

Anja Spang 5 collaborations

Purificación López-García 5 collaborations

Tomáš Pánek 4 collaborations

Joel B Dacks 4 collaborations

Eva F Caceres 3 collaborations

Nina Dombrowski 3 collaborations

Jonathan Lombard 3 collaborations

Brett J Baker 3 collaborations

David Žihala 3 collaborations

Matthew W Brown 3 collaborations

Edward Susko 3 collaborations

Sergio A Muñoz-Gómez 2 collaborations

Claudio H Slamovits 2 collaborations

Eric D Salomaki 2 collaborations

Miluše Hradilová 2 collaborations

Čestmír Vlček 2 collaborations

Max E Schön 2 collaborations

Kiley W Seitz 2 collaborations

Felix Homa 2 collaborations

Andreas P Teske 2 collaborations

Anna Karnkowska 2 collaborations

Sebastian C Treitli 2 collaborations

Ondřej Brzoň 2 collaborations

Vojtěch Vacek 2 collaborations

Petr Soukal 2 collaborations

Shweta V Pipaliya 2 collaborations

Vladimír Hampl 2 collaborations

Alexander K Tice 2 collaborations

Robert E Jones 2 collaborations

Serafim Nenarokov 2 collaborations

Antonis Rokas 2 collaborations

Xing-Xing Shen 2 collaborations

Jürgen F H Strassert 2 collaborations

Martin Kolísko 2 collaborations

Brittany A Baker 2 collaborations

Ana Gutiérrez-Preciado 2 collaborations

Shannon J Sibbald 2 collaborations

John M Archibald 2 collaborations

Jennah E Dharamshi 2 collaborations

Steffen L Jørgensen 2 collaborations

Jan Pyrih 2 collaborations

Jazmin Blaz 2 collaborations

Eunsoo Kim 2 collaborations

Keira Durnin 1 collaboration

Christopher Paight 1 collaboration

Christopher E Lane 1 collaboration

Mary B Saffo 1 collaboration

Sebastian Hess 1 collaboration

Alastair G B Simpson 1 collaboration

Petr Táborský 1 collaboration

Martin Kolisko 1 collaboration

Jon Jerlström-Hultqvist 1 collaboration

Ivan Čepička 1 collaboration

Valerie De Anda 1 collaboration

William H Lewis 1 collaboration

Jimmy H Saw 1 collaboration

Takuro Nunoura 1 collaboration

Wen-Jun Li 1 collaboration

Zheng-Shuang Hua 1 collaboration

Lin-Xing Chen 1 collaboration

Jillian F Banfield 1 collaboration

Emily St John 1 collaboration

Anna-Louise Reysenbach 1 collaboration

Matthew B Stott 1 collaboration

Andreas Schramm 1 collaboration

Kasper U Kjeldsen 1 collaboration

Lukáš Novák 1 collaboration

Lael D Barlow 1 collaboration

Emily K Herman 1 collaboration

Romana Petrželková 1 collaboration

Anzhelika Butenko 1 collaboration

Jessica R Sieber 1 collaboration

Ludek Koreny 1 collaboration

Mohammad Zeeshan 1 collaboration

Konstantin Barylyuk 1 collaboration

Eelco C Tromer 1 collaboration

Jolien J E van Hooff 1 collaboration

Declan Brady 1 collaboration

Huiling Ke 1 collaboration

Sara Chelaghma 1 collaboration

David J P Ferguson 1 collaboration

Rita Tewari 1 collaboration

Ross F Waller 1 collaboration

Fabien Burki 1 collaboration

Álvaro Rodríguez Del Río 1 collaboration

Charley G P McCarthy 1 collaboration

Jaime Huerta-Cepas 1 collaboration

Kelsey Williamson 1 collaboration

Chris Greening 1 collaboration

Vojtěch Žárský 1 collaboration

Vladimír Klimeš 1 collaboration

Jan Pačes 1 collaboration

Vladimír Beneš 1 collaboration

Eva Nývltová 1 collaboration

Ivan Hrdý 1 collaboration

Jan Mach 1 collaboration

Lael Barlow 1 collaboration

Neil Hall 1 collaboration

Andrew Roger 1 collaboration

Jan Tachezy 1 collaboration

Lukáš V F Novák 1 collaboration

Paweł Hałakuc 1 collaboration

Mart Krupovic 1 collaboration

Reindert Nijland 1 collaboration

Nicholas P Robinson 1 collaboration

Bledina Dede 1 collaboration

Hector Banos 1 collaboration

Thomas K F Wong 1 collaboration

Justin Daneau 1 collaboration

Bui Quang Minh 1 collaboration

Robert Lanfear 1 collaboration

Joran Martijn 1 collaboration

Xi Zhang 1 collaboration

Yining Hu 1 collaboration

Shinichiro Maruyama 1 collaboration

Robert J M Eveleigh 1 collaboration

Bruce A Curtis 1 collaboration

Julia F Hopkins 1 collaboration

Gina V Filloramo 1 collaboration

Klaas J van Wijk 1 collaboration

Fabian van Beveren 1 collaboration

Maria Ciobanu 1 collaboration

Eric Salomaki 1 collaboration

Luis Javier Galindo 1 collaboration

Aaron A Heiss 1 collaboration

Harpreet Kaur 1 collaboration

Guifré Torruella 1 collaboration

Ashley Yang 1 collaboration

L Alexa Thompson 1 collaboration

Alexander Filbert 1 collaboration

Sally Warring 1 collaboration

Apurva Narechania 1 collaboration

Takashi Shiratori 1 collaboration

Ken-Ichiro Ishida 1 collaboration

Tom A Williams 1 collaboration

Adrian A Davin 1 collaboration

Lénárd L Szánthó 1 collaboration

Alexandros Stamatakis 1 collaboration

Noah A Wahl 1 collaboration

Ben J Woodcroft 1 collaboration

Rochelle M Soo 1 collaboration

Paul O Sheridan 1 collaboration

Cecile Gubry-Rangin 1 collaboration

Philip Hugenholtz 1 collaboration

Gergely J Szöllősi 1 collaboration