Benjamin Kuster

Affiliations

Virtual City Systems, Tauentzienstrasse 7 b/c, 10789, Berlin, Germany.

Publications (20)

The IMiD target CRBN determines HSP90 activity toward transmembrane proteins essential in multiple myeloma.

Molecular cell

Avec: Michael Heider , Ruth Eichner , Jacob Stroh , Volker Morath , Anna Kuisl , Jana Zecha , Jannis Lawatscheck , Kheewoong Baek , Anne-Kathrin Garz , Martina Rudelius , Friedrich-Christian Deuschle , Ulrich Keller , Simone Lemeer , Mareike Verbeek , Katharina S Götze , Arne Skerra , Wolfgang A Weber , Johannes Buchner , Brenda A Schulman , Bernhard Kuster , Vanesa Fernández-Sáiz , Florian Bassermann

Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning.

Nature methods

Avec: Siegfried Gessulat , Tobias Schmidt , Daniel Paul Zolg , Patroklos Samaras , Karsten Schnatbaum , Johannes Zerweck , Tobias Knaute , Julia Rechenberger , Bernard Delanghe , Andreas Huhmer , Ulf Reimer , Hans-Christian Ehrlich , Stephan Aiche , Bernhard Kuster , Mathias Wilhelm

Chemoproteomic Selectivity Profiling of PIKK and PI3K Kinase Inhibitors.

ACS chemical biology

Avec: Maria Reinecke , Benjamin Ruprecht , Sandra Poser , Svenja Wiechmann , Mathias Wilhelm , Stephanie Heinzlmeir , Bernhard Kuster , Guillaume Médard

The emerging landscape of single-molecule protein sequencing technologies.

Nature methods

Avec: Javier Antonio Alfaro , Peggy Bohländer , Mingjie Dai , Mike Filius , Cecil J Howard , Xander F van Kooten , Shilo Ohayon , Adam Pomorski , Sonja Schmid , Aleksei Aksimentiev , Eric V Anslyn , Georges Bedran , Chan Cao , Mauro Chinappi , Etienne Coyaud , Cees Dekker , Gunnar Dittmar , Nicholas Drachman , Rienk Eelkema , David Goodlett , Sébastien Hentz , Umesh Kalathiya , Neil L Kelleher , Ryan T Kelly , Zvi Kelman , Sung Hyun Kim , Bernhard Kuster , David Rodriguez-Larrea , Stuart Lindsay , Giovanni Maglia , Edward M Marcotte , John P Marino , Christophe Masselon , Michael Mayer , Patroklos Samaras , Kumar Sarthak , Lusia Sepiashvili , Derek Stein , Meni Wanunu , Mathias Wilhelm , Peng Yin , Amit Meller , Chirlmin Joo

ProteomicsDB: toward a FAIR open-source resource for life-science research.

Nucleic acids research

Avec: Ludwig Lautenbacher , Patroklos Samaras , Julian Muller , Andreas Grafberger , Marwin Shraideh , Johannes Rank , Simon T Fuchs , Tobias K Schmidt , Matthew The , Christian Dallago , Holger Wittges , Burkhard Rost , Helmut Krcmar , Bernhard Kuster , Mathias Wilhelm

Linking post-translational modifications and protein turnover by site-resolved protein turnover profiling.

Nature communications

Avec: Jana Zecha , Wassim Gabriel , Ria Spallek , Yun-Chien Chang , Julia Mergner , Mathias Wilhelm , Florian Bassermann , Bernhard Kuster

Proteomic profiling in cerebral amyloid angiopathy reveals an overlap with CADASIL highlighting accumulation of HTRA1 and its substrates.

Acta neuropathologica communications

Avec: Andreas Zellner , Stephan A Müller , Barbara Lindner , Nathalie Beaufort , Annemieke J M Rozemuller , Thomas Arzberger , Nils C Gassen , Stefan F Lichtenthaler , Bernhard Kuster , Christof Haffner , Martin Dichgans

Mass spectrometry-based draft of the mouse proteome.

Nature methods

Avec: Piero Giansanti , Patroklos Samaras , Yangyang Bian , Chen Meng , Andrea Coluccio , Martin Frejno , Hannah Jakubowsky , Sophie Dobiasch , Rashmi R Hazarika , Julia Rechenberger , Julia Calzada-Wack , Johannes Krumm , Sebastian Mueller , Chien-Yun Lee , Nicole Wimberger , Ludwig Lautenbacher , Zonera Hassan , Yun-Chien Chang , Chiara Falcomatà , Florian P Bayer , Stefanie Bärthel , Tobias Schmidt , Roland Rad , Stephanie E Combs , Matthew The , Frank Johannes , Dieter Saur , Martin Hrabe de Angelis , Mathias Wilhelm , Günter Schneider , Bernhard Kuster

AI-Assisted Processing Pipeline to Boost Protein Isoform Detection.

Methods in molecular biology (Clifton, N.J.)

Avec: Matthew The , Mario Picciani , Cecilia Jensen , Wassim Gabriel , Bernhard Kuster , Mathias Wilhelm

A unified classification approach rating clinical utility of protein biomarkers across neurologic diseases.

EBioMedicine

Avec: Alexander M Bernhardt , Steffen Tiedt , Daniel Teupser , Martin Dichgans , Bernhard Meyer , Jens Gempt , Peer-Hendrik Kuhn , Mikael Simons , Carla Palleis , Endy Weidinger , Georg Nübling , Lesca Holdt , Lisa Hönikl , Christiane Gasperi , Pieter Giesbertz , Stephan A Müller , Stephan Breimann , Stefan F Lichtenthaler , Bernhard Kuster , Matthias Mann , Axel Imhof , Teresa Barth , Stefanie M Hauck , Henrik Zetterberg , Markus Otto , Wilko Weichert , Bernhard Hemmer , Johannes Levin

An Introduction to Analytical Challenges, Approaches, and Applications in Mass Spectrometry-Based Secretomics.

Molecular & cellular proteomics : MCP

Avec: Sascha Knecht , H Christian Eberl , Norbert Kreisz , Ukamaka Juliet Ugwu , Tatiana Starikova , Bernhard Kuster , Stephanie Wilhelm

Targeting cancer with small-molecule pan-KRAS degraders.

Science (New York, N.Y.)

Avec: Johannes Popow , William Farnaby , Andreas Gollner , Christiane Kofink , Gerhard Fischer , Melanie Wurm , David Zollman , Andre Wijaya , Nikolai Mischerikow , Carina Hasenoehrl , Polina Prokofeva , Heribert Arnhof , Silvia Arce-Solano , Sammy Bell , Georg Boeck , Emelyne Diers , Aileen B Frost , Jake Goodwin-Tindall , Jale Karolyi-Oezguer , Shakil Khan , Theresa Klawatsch , Manfred Koegl , Roland Kousek , Barbara Kratochvil , Katrin Kropatsch , Arnel A Lauber , Ross McLennan , Sabine Olt , Daniel Peter , Oliver Petermann , Vanessa Roessler , Peggy Stolt-Bergner , Patrick Strack , Eva Strauss , Nicole Trainor , Vesna Vetma , Claire Whitworth , Siying Zhong , Jens Quant , Harald Weinstabl , Bernhard Kuster , Peter Ettmayer , Alessio Ciulli

Rebuilding core abscisic acid signaling pathways of Arabidopsis in yeast.

The EMBO journal

Avec: Moritz Ruschhaupt , Julia Mergner , Stefanie Mucha , Michael Papacek , Isabel Doch , Stefanie V Tischer , Daniel Hemmler , David Chiasson , Kai H Edel , Jörg Kudla , Philippe Schmitt-Kopplin , Bernhard Kuster , Erwin Grill

Cool Farm Tool Water: A global on-line tool to assess water use in crop production.

Journal of cleaner production

Avec: Benjamin Kayatz , Gabriele Baroni , Jon Hillier , Stefan Lüdtke , Richard Heathcote , Daniella Malin , Carl van Tonder , Benjamin Kuster , Dirk Freese , Reinhard Hüttl , Martin Wattenbach

Ligand-Mediated Band Engineering in Bottom-Up Assembled SnTe Nanocomposites for Thermoelectric Energy Conversion.

Journal of the American Chemical Society

Avec: Maria Ibáñez , Roger Hasler , Aziz Genç , Yu Liu , Beatrice Kuster , Maximilian Schuster , Oleksandr Dobrozhan , Doris Cadavid , Jordi Arbiol , Andreu Cabot , Maksym V Kovalenko

CiRCus: A Framework to Enable Classification of Complex High-Throughput Experiments.

Journal of proteome research

Avec: Florian Seefried , Tobias Schmidt , Maria Reinecke , Stephanie Heinzlmeir , Bernhard Kuster , Mathias Wilhelm

A deep proteome and transcriptome abundance atlas of 29 healthy human tissues.

Molecular systems biology

Avec: Dongxue Wang , Basak Eraslan , Thomas Wieland , Björn Hallström , Thomas Hopf , Daniel Paul Zolg , Jana Zecha , Anna Asplund , Li-Hua Li , Chen Meng , Martin Frejno , Tobias Schmidt , Karsten Schnatbaum , Mathias Wilhelm , Frederik Ponten , Mathias Uhlen , Julien Gagneur , Hannes Hahne , Bernhard Kuster

Quantification and discovery of sequence determinants of protein-per-mRNA amount in 29 human tissues.

Molecular systems biology

Avec: Basak Eraslan , Dongxue Wang , Mirjana Gusic , Holger Prokisch , Björn M Hallström , Mathias Uhlén , Anna Asplund , Frederik Pontén , Thomas Wieland , Thomas Hopf , Hannes Hahne , Bernhard Kuster , Julien Gagneur

Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC-MS/MS.

Nature communications

Avec: Yangyang Bian , Runsheng Zheng , Florian P Bayer , Cassandra Wong , Yun-Chien Chang , Chen Meng , Daniel P Zolg , Maria Reinecke , Jana Zecha , Svenja Wiechmann , Stephanie Heinzlmeir , Johannes Scherr , Bernhard Hemmer , Mike Baynham , Anne-Claude Gingras , Oleksandr Boychenko , Bernhard Kuster

ProteomicsDB: a multi-omics and multi-organism resource for life science research.

Nucleic acids research

Avec: Patroklos Samaras , Tobias Schmidt , Martin Frejno , Siegfried Gessulat , Maria Reinecke , Anna Jarzab , Jana Zecha , Julia Mergner , Piero Giansanti , Hans-Christian Ehrlich , Stephan Aiche , Johannes Rank , Harald Kienegger , Helmut Krcmar , Bernhard Kuster , Mathias Wilhelm

Réseau de co-auteurs

Bernhard Kuster 18 collaborations

Mathias Wilhelm 10 collaborations

Jana Zecha 5 collaborations

Tobias Schmidt 5 collaborations

Patroklos Samaras 5 collaborations

Maria Reinecke 4 collaborations

Stephanie Heinzlmeir 3 collaborations

Matthew The 3 collaborations

Yun-Chien Chang 3 collaborations

Julia Mergner 3 collaborations

Chen Meng 3 collaborations

Martin Frejno 3 collaborations

Florian Bassermann 2 collaborations

Siegfried Gessulat 2 collaborations

Daniel Paul Zolg 2 collaborations

Karsten Schnatbaum 2 collaborations

Julia Rechenberger 2 collaborations

Hans-Christian Ehrlich 2 collaborations

Stephan Aiche 2 collaborations

Svenja Wiechmann 2 collaborations

Ludwig Lautenbacher 2 collaborations

Johannes Rank 2 collaborations

Helmut Krcmar 2 collaborations

Wassim Gabriel 2 collaborations

Stephan A Müller 2 collaborations

Stefan F Lichtenthaler 2 collaborations

Martin Dichgans 2 collaborations

Piero Giansanti 2 collaborations

Yangyang Bian 2 collaborations

Florian P Bayer 2 collaborations

Bernhard Hemmer 2 collaborations

Dongxue Wang 2 collaborations

Basak Eraslan 2 collaborations

Thomas Wieland 2 collaborations

Thomas Hopf 2 collaborations

Anna Asplund 2 collaborations

Julien Gagneur 2 collaborations

Hannes Hahne 2 collaborations

Michael Heider 1 collaboration

Ruth Eichner 1 collaboration

Jacob Stroh 1 collaboration

Volker Morath 1 collaboration

Anna Kuisl 1 collaboration

Jannis Lawatscheck 1 collaboration

Kheewoong Baek 1 collaboration

Anne-Kathrin Garz 1 collaboration

Martina Rudelius 1 collaboration

Friedrich-Christian Deuschle 1 collaboration

Ulrich Keller 1 collaboration

Simone Lemeer 1 collaboration

Mareike Verbeek 1 collaboration

Katharina S Götze 1 collaboration

Arne Skerra 1 collaboration

Wolfgang A Weber 1 collaboration

Johannes Buchner 1 collaboration

Brenda A Schulman 1 collaboration

Vanesa Fernández-Sáiz 1 collaboration

Johannes Zerweck 1 collaboration

Tobias Knaute 1 collaboration

Bernard Delanghe 1 collaboration

Andreas Huhmer 1 collaboration

Ulf Reimer 1 collaboration

Benjamin Ruprecht 1 collaboration

Sandra Poser 1 collaboration

Guillaume Médard 1 collaboration

Javier Antonio Alfaro 1 collaboration

Peggy Bohländer 1 collaboration

Mingjie Dai 1 collaboration

Mike Filius 1 collaboration

Cecil J Howard 1 collaboration

Xander F van Kooten 1 collaboration

Shilo Ohayon 1 collaboration

Adam Pomorski 1 collaboration

Sonja Schmid 1 collaboration

Aleksei Aksimentiev 1 collaboration

Eric V Anslyn 1 collaboration

Georges Bedran 1 collaboration

Chan Cao 1 collaboration

Mauro Chinappi 1 collaboration

Etienne Coyaud 1 collaboration

Cees Dekker 1 collaboration

Gunnar Dittmar 1 collaboration

Nicholas Drachman 1 collaboration

Rienk Eelkema 1 collaboration

David Goodlett 1 collaboration

Sébastien Hentz 1 collaboration

Umesh Kalathiya 1 collaboration

Neil L Kelleher 1 collaboration

Ryan T Kelly 1 collaboration

Zvi Kelman 1 collaboration

Sung Hyun Kim 1 collaboration

David Rodriguez-Larrea 1 collaboration

Stuart Lindsay 1 collaboration

Giovanni Maglia 1 collaboration

Edward M Marcotte 1 collaboration

John P Marino 1 collaboration

Christophe Masselon 1 collaboration

Michael Mayer 1 collaboration

Kumar Sarthak 1 collaboration

Lusia Sepiashvili 1 collaboration

Derek Stein 1 collaboration

Meni Wanunu 1 collaboration

Peng Yin 1 collaboration

Amit Meller 1 collaboration

Chirlmin Joo 1 collaboration

Julian Muller 1 collaboration

Andreas Grafberger 1 collaboration

Marwin Shraideh 1 collaboration

Simon T Fuchs 1 collaboration

Tobias K Schmidt 1 collaboration

Christian Dallago 1 collaboration

Holger Wittges 1 collaboration

Burkhard Rost 1 collaboration

Ria Spallek 1 collaboration

Andreas Zellner 1 collaboration

Barbara Lindner 1 collaboration

Nathalie Beaufort 1 collaboration

Annemieke J M Rozemuller 1 collaboration

Thomas Arzberger 1 collaboration

Nils C Gassen 1 collaboration

Christof Haffner 1 collaboration

Andrea Coluccio 1 collaboration

Hannah Jakubowsky 1 collaboration

Sophie Dobiasch 1 collaboration

Rashmi R Hazarika 1 collaboration

Julia Calzada-Wack 1 collaboration

Johannes Krumm 1 collaboration

Sebastian Mueller 1 collaboration

Chien-Yun Lee 1 collaboration

Nicole Wimberger 1 collaboration

Zonera Hassan 1 collaboration

Chiara Falcomatà 1 collaboration

Stefanie Bärthel 1 collaboration

Roland Rad 1 collaboration

Stephanie E Combs 1 collaboration

Frank Johannes 1 collaboration

Dieter Saur 1 collaboration

Martin Hrabe de Angelis 1 collaboration

Günter Schneider 1 collaboration

Mario Picciani 1 collaboration

Cecilia Jensen 1 collaboration

Alexander M Bernhardt 1 collaboration

Steffen Tiedt 1 collaboration

Daniel Teupser 1 collaboration

Bernhard Meyer 1 collaboration

Jens Gempt 1 collaboration

Peer-Hendrik Kuhn 1 collaboration

Mikael Simons 1 collaboration

Carla Palleis 1 collaboration

Endy Weidinger 1 collaboration

Georg Nübling 1 collaboration

Lesca Holdt 1 collaboration

Lisa Hönikl 1 collaboration

Christiane Gasperi 1 collaboration

Pieter Giesbertz 1 collaboration

Stephan Breimann 1 collaboration

Matthias Mann 1 collaboration

Axel Imhof 1 collaboration

Teresa Barth 1 collaboration

Stefanie M Hauck 1 collaboration

Henrik Zetterberg 1 collaboration

Markus Otto 1 collaboration

Wilko Weichert 1 collaboration

Johannes Levin 1 collaboration

Sascha Knecht 1 collaboration

H Christian Eberl 1 collaboration

Norbert Kreisz 1 collaboration

Ukamaka Juliet Ugwu 1 collaboration

Tatiana Starikova 1 collaboration

Stephanie Wilhelm 1 collaboration

Johannes Popow 1 collaboration

William Farnaby 1 collaboration

Andreas Gollner 1 collaboration

Christiane Kofink 1 collaboration

Gerhard Fischer 1 collaboration

Melanie Wurm 1 collaboration

David Zollman 1 collaboration

Andre Wijaya 1 collaboration

Nikolai Mischerikow 1 collaboration

Carina Hasenoehrl 1 collaboration

Polina Prokofeva 1 collaboration

Heribert Arnhof 1 collaboration

Silvia Arce-Solano 1 collaboration

Sammy Bell 1 collaboration

Georg Boeck 1 collaboration

Emelyne Diers 1 collaboration

Aileen B Frost 1 collaboration

Jake Goodwin-Tindall 1 collaboration

Jale Karolyi-Oezguer 1 collaboration

Shakil Khan 1 collaboration

Theresa Klawatsch 1 collaboration

Manfred Koegl 1 collaboration

Roland Kousek 1 collaboration

Barbara Kratochvil 1 collaboration

Katrin Kropatsch 1 collaboration

Arnel A Lauber 1 collaboration

Ross McLennan 1 collaboration

Sabine Olt 1 collaboration

Daniel Peter 1 collaboration

Oliver Petermann 1 collaboration

Vanessa Roessler 1 collaboration

Peggy Stolt-Bergner 1 collaboration

Patrick Strack 1 collaboration

Eva Strauss 1 collaboration

Nicole Trainor 1 collaboration

Vesna Vetma 1 collaboration

Claire Whitworth 1 collaboration

Siying Zhong 1 collaboration

Jens Quant 1 collaboration

Harald Weinstabl 1 collaboration

Peter Ettmayer 1 collaboration

Alessio Ciulli 1 collaboration

Moritz Ruschhaupt 1 collaboration

Stefanie Mucha 1 collaboration

Michael Papacek 1 collaboration

Isabel Doch 1 collaboration

Stefanie V Tischer 1 collaboration

Daniel Hemmler 1 collaboration

David Chiasson 1 collaboration

Kai H Edel 1 collaboration

Jörg Kudla 1 collaboration

Philippe Schmitt-Kopplin 1 collaboration

Erwin Grill 1 collaboration

Benjamin Kayatz 1 collaboration

Gabriele Baroni 1 collaboration

Jon Hillier 1 collaboration

Stefan Lüdtke 1 collaboration

Richard Heathcote 1 collaboration

Daniella Malin 1 collaboration

Carl van Tonder 1 collaboration

Dirk Freese 1 collaboration

Reinhard Hüttl 1 collaboration

Martin Wattenbach 1 collaboration

Maria Ibáñez 1 collaboration

Roger Hasler 1 collaboration

Aziz Genç 1 collaboration

Yu Liu 1 collaboration

Beatrice Kuster 1 collaboration

Maximilian Schuster 1 collaboration

Oleksandr Dobrozhan 1 collaboration

Doris Cadavid 1 collaboration

Jordi Arbiol 1 collaboration

Andreu Cabot 1 collaboration

Maksym V Kovalenko 1 collaboration

Florian Seefried 1 collaboration

Björn Hallström 1 collaboration

Li-Hua Li 1 collaboration

Frederik Ponten 1 collaboration

Mathias Uhlen 1 collaboration

Mirjana Gusic 1 collaboration

Holger Prokisch 1 collaboration

Björn M Hallström 1 collaboration

Mathias Uhlén 1 collaboration

Frederik Pontén 1 collaboration

Runsheng Zheng 1 collaboration

Cassandra Wong 1 collaboration

Daniel P Zolg 1 collaboration

Johannes Scherr 1 collaboration

Mike Baynham 1 collaboration

Anne-Claude Gingras 1 collaboration

Oleksandr Boychenko 1 collaboration

Anna Jarzab 1 collaboration

Harald Kienegger 1 collaboration