Jesper Tegner

Affiliations

Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
SDAIA-KAUST Center of Excellence in Data Science and Artificial Intelligence, Thuwal, Saudi Arabia.
Unit of Computational Medicine, Department of Medicine, Center for Molecular Medicine, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden.
Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.

Publications (16)

A robust clustering strategy for stratification unveils unique patient subgroups in acutely decompensated cirrhosis.

Journal of translational medicine

Avec: Sara Palomino-Echeverria , Estefania Huergo , Asier Ortega-Legarreta , Eva M Uson Raposo , Ferran Aguilar , Carlos de la Peña-Ramirez , Cristina López-Vicario , Carlo Alessandria , Wim Laleman , Alberto Queiroz Farias , Richard Moreau , Javier Fernandez , Vicente Arroyo , Paolo Caraceni , Vincenzo Lagani , Cristina Sánchez-Garrido , Joan Clària , Jesper Tegner , Jonel Trebicka , Narsis A Kiani , Nuria Planell , Pierre-Emmanuel Rautou , David Gomez-Cabrero

Associations of Plasma 3-Methylhistidine with Frailty Status in French Cohorts of the FRAILOMIC Initiative.

Journal of clinical medicine

Avec: Bastian Kochlik , Wolfgang Stuetz , Karine Pérès , Catherine Féart , Jesper Tegner , Leocadio Rodriguez-Mañas , Tilman Grune , Daniela Weber

HLA-based banking of induced pluripotent stem cells in Saudi Arabia.

Stem cell research & therapy

Avec: Maryam Alowaysi , Robert Lehmann , Mohammad Al-Shehri , Moayad Baadhaim , Hajar Alzahrani , Doaa Aboalola , Asima Zia , Dalal Malibari , Mustafa Daghestani , Khaled Alghamdi , Ali Haneef , Dunia Jawdat , Fahad Hakami , David Gomez-Cabrero , Jesper Tegner , Khaled Alsayegh

MYC as a driver of stochastic chromatin networks: implications for the fitness of cancer cells.

Nucleic acids research

Avec: Noriyuki Sumida , Emmanouil G Sifakis , Narsis A Kiani , Anna Lewandowska Ronnegren , Barbara A Scholz , Johanna Vestlund , David Gomez-Cabrero , Jesper Tegner , Anita Göndör , Rolf Ohlsson

A robust machine learning framework to identify signatures for frailty: a nested case-control study in four aging European cohorts.

GeroScience

Avec: David Gomez-Cabrero , Stefan Walter , Imad Abugessaisa , Rebeca Miñambres-Herraiz , Lucia Bernad Palomares , Lee Butcher , Jorge D Erusalimsky , Francisco Jose Garcia-Garcia , José Carnicero , Timothy C Hardman , Harald Mischak , Petra Zürbig , Matthias Hackl , Johannes Grillari , Edoardo Fiorillo , Francesco Cucca , Matteo Cesari , Isabelle Carrie , Marco Colpo , Stefania Bandinelli , Catherine Feart , Karine Peres , Jean-François Dartigues , Catherine Helmer , José Viña , Gloria Olaso , Irene García-Palmero , Jorge García Martínez , Pidder Jansen-Dürr , Tilman Grune , Daniela Weber , Giuseppe Lippi , Chiara Bonaguri , Alan J Sinclair , Jesper Tegner , Leocadio Rodriguez-Mañas , Auteur inconnu

Predicting anti-PD-1 responders in malignant melanoma from the frequency of S100A9+ monocytes in the blood.

Journal for immunotherapy of cancer

Avec: Soudabeh Rad Pour , Yago Pico de Coaña , Xavier Martinez Demorentin , Jeroen Melief , Manjula Thimma , Maria Wolodarski , David Gomez-Cabrero , Johan Hansson , Rolf Kiessling , Jesper Tegner

scAEGAN: Unification of single-cell genomics data by adversarial learning of latent space correspondences.

PloS one

Avec: Sumeer Ahmad Khan , Robert Lehmann , Xabier Martinez-de-Morentin , Alberto Maillo , Vincenzo Lagani , Narsis A Kiani , David Gomez-Cabrero , Jesper Tegner

Combining evidence from four immune cell types identifies DNA methylation patterns that implicate functionally distinct pathways during Multiple Sclerosis progression.

EBioMedicine

Avec: Ewoud Ewing , Lara Kular , Sunjay J Fernandes , Nestoras Karathanasis , Vincenzo Lagani , Sabrina Ruhrmann , Ioannis Tsamardinos , Jesper Tegner , Fredrik Piehl , David Gomez-Cabrero , Maja Jagodic

MAPK pathway and B cells overactivation in multiple sclerosis revealed by phosphoproteomics and genomic analysis.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Ekaterina Kotelnikova , Narsis A Kiani , Dimitris Messinis , Inna Pertsovskaya , Vicky Pliaka , Marti Bernardo-Faura , Melanie Rinas , Gemma Vila , Irati Zubizarreta , Irene Pulido-Valdeolivas , Theodore Sakellaropoulos , Wolfgang Faigle , Gilad Silberberg , Mar Masso , Pernilla Stridh , Janina Behrens , Tomas Olsson , Roland Martin , Friedemann Paul , Leonidas G Alexopoulos , Julio Saez-Rodriguez , Jesper Tegner , Pablo Villoslada

Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation.

PLoS biology

Avec: Isabel Ferreirós-Vidal , Thomas Carroll , Tianyi Zhang , Vincenzo Lagani , Ricardo N Ramirez , Elizabeth Ing-Simmons , Alicia G Gómez-Valadés , Lee Cooper , Ziwei Liang , Georgios Papoutsoglou , Gopuraja Dharmalingam , Ya Guo , Sonia Tarazona , Sunjay J Fernandes , Peri Noori , Gilad Silberberg , Amanda G Fisher , Ioannis Tsamardinos , Ali Mortazavi , Boris Lenhard , Ana Conesa , Jesper Tegner , Matthias Merkenschlager , David Gomez-Cabrero

STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse.

Scientific data

Avec: David Gomez-Cabrero , Sonia Tarazona , Isabel Ferreirós-Vidal , Ricardo N Ramirez , Carlos Company , Andreas Schmidt , Theo Reijmers , Veronica von Saint Paul , Francesco Marabita , Javier Rodríguez-Ubreva , Antonio Garcia-Gomez , Thomas Carroll , Lee Cooper , Ziwei Liang , Gopuraja Dharmalingam , Frans van der Kloet , Amy C Harms , Leandro Balzano-Nogueira , Vincenzo Lagani , Ioannis Tsamardinos , Michael Lappe , Dieter Maier , Johan A Westerhuis , Thomas Hankemeier , Axel Imhof , Esteban Ballestar , Ali Mortazavi , Matthias Merkenschlager , Jesper Tegner , Ana Conesa

Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps.

PLoS computational biology

Avec: Camden Jansen , Ricardo N Ramirez , Nicole C El-Ali , David Gomez-Cabrero , Jesper Tegner , Matthias Merkenschlager , Ana Conesa , Ali Mortazavi

Elucidating the Role of Virulence Traits in the Survival of Pathogenic

Frontiers in bioengineering and biotechnology

Avec: Krishnakumar Sivakumar , Robert Lehmann , Andri Taruna Rachmadi , Nicolas Augsburger , Noor Zaouri , Jesper Tegner , Pei-Ying Hong

STATegra: Multi-Omics Data Integration - A Conceptual Scheme With a Bioinformatics Pipeline.

Frontiers in genetics

Avec: Nuria Planell , Vincenzo Lagani , Patricia Sebastian-Leon , Frans van der Kloet , Ewoud Ewing , Nestoras Karathanasis , Arantxa Urdangarin , Imanol Arozarena , Maja Jagodic , Ioannis Tsamardinos , Sonia Tarazona , Ana Conesa , Jesper Tegner , David Gomez-Cabrero

Generation of iPSC lines (KAIMRCi003A, KAIMRCi003B) from a Saudi patient with Dravet syndrome carrying homozygous mutation in the CPLX1 gene and heterozygous mutation in SCN9A.

Human cell

Avec: Maryam Alowaysi , Mohammad Al-Shehri , Amani Badkok , Hanouf Attas , Doaa Aboalola , Moayad Baadhaim , Hajar Alzahrani , Mustafa Daghestani , Asima Zia , Khalid Al-Ghamdi , Asayil Al-Ghamdi , Samer Zakri , Sihem Aouabdi , Jesper Tegner , Khaled Alsayegh

Generation of myoglobin (MB)-knockout human embryonic stem cell (hESC) line (KAIMRCe002-A-1S) using CRISPR/Cas9 technology.

Stem cell research

Avec: Maryam Alowaysi , Mohammad Al-Shehri , Moayad Baadhaim , Hajar AlZahrani , Doaa Aboalola , Mustafa Daghestani , Heba Hashem , Rawan Aljahdali , Rayan Salem , Adel Alharbi , Mohammed Muharraq , Khaled Alghamdi , Fawaz Alsobiy , Asima Zia , Robert Lehmann , Jesper Tegner , Khaled Alsayegh

Réseau de co-auteurs

David Gomez-Cabrero 11 collaborations

Vincenzo Lagani 6 collaborations

Narsis A Kiani 4 collaborations

Robert Lehmann 4 collaborations

Ioannis Tsamardinos 4 collaborations

Ana Conesa 4 collaborations

Maryam Alowaysi 3 collaborations

Mohammad Al-Shehri 3 collaborations

Moayad Baadhaim 3 collaborations

Doaa Aboalola 3 collaborations

Asima Zia 3 collaborations

Mustafa Daghestani 3 collaborations

Khaled Alsayegh 3 collaborations

Ricardo N Ramirez 3 collaborations

Sonia Tarazona 3 collaborations

Ali Mortazavi 3 collaborations

Matthias Merkenschlager 3 collaborations

Nuria Planell 2 collaborations

Leocadio Rodriguez-Mañas 2 collaborations

Tilman Grune 2 collaborations

Daniela Weber 2 collaborations

Hajar Alzahrani 2 collaborations

Khaled Alghamdi 2 collaborations

Ewoud Ewing 2 collaborations

Sunjay J Fernandes 2 collaborations

Nestoras Karathanasis 2 collaborations

Maja Jagodic 2 collaborations

Gilad Silberberg 2 collaborations

Isabel Ferreirós-Vidal 2 collaborations

Thomas Carroll 2 collaborations

Lee Cooper 2 collaborations

Ziwei Liang 2 collaborations

Gopuraja Dharmalingam 2 collaborations

Frans van der Kloet 2 collaborations

Sara Palomino-Echeverria 1 collaboration

Estefania Huergo 1 collaboration

Asier Ortega-Legarreta 1 collaboration

Eva M Uson Raposo 1 collaboration

Ferran Aguilar 1 collaboration

Carlos de la Peña-Ramirez 1 collaboration

Cristina López-Vicario 1 collaboration

Carlo Alessandria 1 collaboration

Wim Laleman 1 collaboration

Alberto Queiroz Farias 1 collaboration

Richard Moreau 1 collaboration

Javier Fernandez 1 collaboration

Vicente Arroyo 1 collaboration

Paolo Caraceni 1 collaboration

Cristina Sánchez-Garrido 1 collaboration

Joan Clària 1 collaboration

Jonel Trebicka 1 collaboration

Pierre-Emmanuel Rautou 1 collaboration

Bastian Kochlik 1 collaboration

Wolfgang Stuetz 1 collaboration

Karine Pérès 1 collaboration

Catherine Féart 1 collaboration

Dalal Malibari 1 collaboration

Ali Haneef 1 collaboration

Dunia Jawdat 1 collaboration

Fahad Hakami 1 collaboration

Noriyuki Sumida 1 collaboration

Emmanouil G Sifakis 1 collaboration

Anna Lewandowska Ronnegren 1 collaboration

Barbara A Scholz 1 collaboration

Johanna Vestlund 1 collaboration

Anita Göndör 1 collaboration

Rolf Ohlsson 1 collaboration

Stefan Walter 1 collaboration

Imad Abugessaisa 1 collaboration

Rebeca Miñambres-Herraiz 1 collaboration

Lucia Bernad Palomares 1 collaboration

Lee Butcher 1 collaboration

Jorge D Erusalimsky 1 collaboration

Francisco Jose Garcia-Garcia 1 collaboration

José Carnicero 1 collaboration

Timothy C Hardman 1 collaboration

Harald Mischak 1 collaboration

Petra Zürbig 1 collaboration

Matthias Hackl 1 collaboration

Johannes Grillari 1 collaboration

Edoardo Fiorillo 1 collaboration

Francesco Cucca 1 collaboration

Matteo Cesari 1 collaboration

Isabelle Carrie 1 collaboration

Marco Colpo 1 collaboration

Stefania Bandinelli 1 collaboration

Catherine Feart 1 collaboration

Karine Peres 1 collaboration

Jean-François Dartigues 1 collaboration

Catherine Helmer 1 collaboration

José Viña 1 collaboration

Gloria Olaso 1 collaboration

Irene García-Palmero 1 collaboration

Jorge García Martínez 1 collaboration

Pidder Jansen-Dürr 1 collaboration

Giuseppe Lippi 1 collaboration

Chiara Bonaguri 1 collaboration

Alan J Sinclair 1 collaboration

None None 1 collaboration

Soudabeh Rad Pour 1 collaboration

Yago Pico de Coaña 1 collaboration

Xavier Martinez Demorentin 1 collaboration

Jeroen Melief 1 collaboration

Manjula Thimma 1 collaboration

Maria Wolodarski 1 collaboration

Johan Hansson 1 collaboration

Rolf Kiessling 1 collaboration

Sumeer Ahmad Khan 1 collaboration

Xabier Martinez-de-Morentin 1 collaboration

Alberto Maillo 1 collaboration

Lara Kular 1 collaboration

Sabrina Ruhrmann 1 collaboration

Fredrik Piehl 1 collaboration

Ekaterina Kotelnikova 1 collaboration

Dimitris Messinis 1 collaboration

Inna Pertsovskaya 1 collaboration

Vicky Pliaka 1 collaboration

Marti Bernardo-Faura 1 collaboration

Melanie Rinas 1 collaboration

Gemma Vila 1 collaboration

Irati Zubizarreta 1 collaboration

Irene Pulido-Valdeolivas 1 collaboration

Theodore Sakellaropoulos 1 collaboration

Wolfgang Faigle 1 collaboration

Mar Masso 1 collaboration

Pernilla Stridh 1 collaboration

Janina Behrens 1 collaboration

Tomas Olsson 1 collaboration

Roland Martin 1 collaboration

Friedemann Paul 1 collaboration

Leonidas G Alexopoulos 1 collaboration

Julio Saez-Rodriguez 1 collaboration

Pablo Villoslada 1 collaboration

Tianyi Zhang 1 collaboration

Elizabeth Ing-Simmons 1 collaboration

Alicia G Gómez-Valadés 1 collaboration

Georgios Papoutsoglou 1 collaboration

Ya Guo 1 collaboration

Peri Noori 1 collaboration

Amanda G Fisher 1 collaboration

Boris Lenhard 1 collaboration

Carlos Company 1 collaboration

Andreas Schmidt 1 collaboration

Theo Reijmers 1 collaboration

Veronica von Saint Paul 1 collaboration

Francesco Marabita 1 collaboration

Javier Rodríguez-Ubreva 1 collaboration

Antonio Garcia-Gomez 1 collaboration

Amy C Harms 1 collaboration

Leandro Balzano-Nogueira 1 collaboration

Michael Lappe 1 collaboration

Dieter Maier 1 collaboration

Johan A Westerhuis 1 collaboration

Thomas Hankemeier 1 collaboration

Axel Imhof 1 collaboration

Esteban Ballestar 1 collaboration

Camden Jansen 1 collaboration

Nicole C El-Ali 1 collaboration

Krishnakumar Sivakumar 1 collaboration

Andri Taruna Rachmadi 1 collaboration

Nicolas Augsburger 1 collaboration

Noor Zaouri 1 collaboration

Pei-Ying Hong 1 collaboration

Patricia Sebastian-Leon 1 collaboration

Arantxa Urdangarin 1 collaboration

Imanol Arozarena 1 collaboration

Amani Badkok 1 collaboration

Hanouf Attas 1 collaboration

Khalid Al-Ghamdi 1 collaboration

Asayil Al-Ghamdi 1 collaboration

Samer Zakri 1 collaboration

Sihem Aouabdi 1 collaboration

Hajar AlZahrani 1 collaboration

Heba Hashem 1 collaboration

Rawan Aljahdali 1 collaboration

Rayan Salem 1 collaboration

Adel Alharbi 1 collaboration

Mohammed Muharraq 1 collaboration

Fawaz Alsobiy 1 collaboration