Magda Bienko

Affiliations

Science for Life Laboratory, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden.

Publications (34)

A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.

Cell

Avec: Michaela Asp , Stefania Giacomello , Ludvig Larsson , Chenglin Wu , Daniel Fürth , Xiaoyan Qian , Eva Wärdell , Joaquin Custodio , Johan Reimegård , Fredrik Salmén , Cecilia Österholm , Patrik L Ståhl , Erik Sundström , Elisabet Åkesson , Olaf Bergmann , Magda Bienko , Agneta Månsson-Broberg , Mats Nilsson , Christer Sylvén , Joakim Lundeberg

iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture.

Nature communications

Avec: Eleni Gelali , Gabriele Girelli , Masahiro Matsumoto , Erik Wernersson , Joaquin Custodio , Ana Mota , Maud Schweitzer , Katalin Ferenc , Xinge Li , Reza Mirzazadeh , Federico Agostini , John P Schell , Fredrik Lanner , Nicola Crosetto , Magda Bienko

Programming Effect of the Parental Obesity on the Skeletal System of Offspring at Weaning Day.

Animals : an open access journal from MDPI

Avec: Radoslaw Piotr Radzki , Marek Bienko , Dariusz Wolski , Monika Ostapiuk , Pawel Polak , Malgorzata Manastyrska , Aleksandra Kimicka , Joanna Wolska

COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance.

Nature communications

Avec: Michele Simonetti , Ning Zhang , Luuk Harbers , Maria Grazia Milia , Silvia Brossa , Thi Thu Huong Nguyen , Francesco Cerutti , Enrico Berrino , Anna Sapino , Magda Bienko , Antonino Sottile , Valeria Ghisetti , Nicola Crosetto

Emerging methods and applications in 3D genomics.

Current opinion in cell biology

Avec: Simona Pedrotti , Ilaria Castiglioni , Cynthia Perez-Estrada , Linxuan Zhao , Jinxin Phaedo Chen , Nicola Crosetto , Magda Bienko

Somatic Copy Number Alterations in Human Cancers: An Analysis of Publicly Available Data From The Cancer Genome Atlas.

Frontiers in oncology

Avec: Luuk Harbers , Federico Agostini , Marcin Nicos , Dimitri Poddighe , Magda Bienko , Nicola Crosetto

Genome-wide detection of DNA double-strand breaks by in-suspension BLISS.

Nature protocols

Avec: Britta A M Bouwman , Federico Agostini , Silvano Garnerone , Giuseppe Petrosino , Henrike J Gothe , Sergi Sayols , Andreas E Moor , Shalev Itzkovitz , Magda Bienko , Vassilis Roukos , Nicola Crosetto

When Incorporated into Fruit Sorbet Matrix, Are the Fructans in Natural Raw Materials More Beneficial for Bone Health than Commercial Formulation Added Alone?

Animals : an open access journal from MDPI

Avec: Kinga Topolska , Marek Bienko , Paweł Ptaszek , Adam Florkiewicz , Radoslaw P Radzki , Agnieszka Filipiak-Florkiewicz

Dangerous RNA links pave the way to glioblastoma.

Molecular cell

Avec: Magda Bienko

Genomic Profiling Identifies Putative Pathogenic Alterations in NSCLC Brain Metastases.

JTO clinical and research reports

Avec: Marcin Nicoś , Luuk Harbers , Enrico Patrucco , Maximilian Kramer-Drauberg , Xiaolu Zhang , Claudia Voena , Anna Kowalczyk , Aleksandra Bożyk , Rafał Pęksa , Bożena Jarosz , Justyna Szumiło , Michele Simonetti , Monika Żuk , Bartosz Wasąg , Katarzyna Reszka , Renata Duchnowska , Janusz Milanowski , Roberto Chiarle , Magda Bienko , Paweł Krawczyk , Jacek Jassem , Chiara Ambrogio , Nicola Crosetto

Deficiency of the Heterogeneous Nuclear Ribonucleoprotein U locus leads to delayed hindbrain neurogenesis.

Biology open

Avec: Francesca Mastropasqua , Marika Oksanen , Cristina Soldini , Shemim Alatar , Abishek Arora , Roberto Ballarino , Maya Molinari , Federico Agostini , Axel Poulet , Michelle Watts , Ielyzaveta Rabkina , Martin Becker , Danyang Li , Britt-Marie Anderlid , Johan Isaksson , Karl Lundin Remnelius , Mohsen Moslem , Yannick Jacob , Anna Falk , Nicola Crosetto , Magda Bienko , Emanuela Santini , Anders Borgkvist , Sven Bölte , Kristiina Tammimies

Enhancers dysfunction in the 3D genome of cancer cells.

Frontiers in cell and developmental biology

Avec: Giulia Della Chiara , Carlos Jiménez , Mohit Virdi , Nicola Crosetto , Magda Bienko

Comparison of maternal characteristics, pregnancy course, and neonatal outcome in preterm births with and without prelabor rupture of membranes.

Ginekologia polska

Avec: Joanna Kacperczyk-Bartnik , Pawel Bartnik , Justyna Teliga-Czajkowska , Aneta Malinowska-Polubiec , Agnieszka Dobrowolska-Redo , Ewa Romejko-Wolniewicz , Malgorzata Bienko , Krzysztof Czajkowski

Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images.

Nature methods

Avec: Erik Wernersson , Eleni Gelali , Gabriele Girelli , Su Wang , David Castillo , Christoffer Mattsson Langseth , Quentin Verron , Huy Q Nguyen , Shyamtanu Chattoraj , Anna Martinez Casals , Hans Blom , Emma Lundberg , Mats Nilsson , Marc A Marti-Renom , Chao-Ting Wu , Nicola Crosetto , Magda Bienko

FRET-FISH probes chromatin compaction at individual genomic loci in single cells.

Nature communications

Avec: Ana Mota , Szymon Berezicki , Erik Wernersson , Luuk Harbers , Xiaoze Li-Wang , Katarina Gradin , Christiane Peuckert , Nicola Crosetto , Magda Bienko

Comparing the Healing Abilities of Fluorapatite and Hydroxyapatite Ceramics in Regenerating Bone Tissue: An In Vivo Study.

Materials (Basel, Switzerland)

Avec: Leszek Borkowski , Mariusz Jojczuk , Anna Belcarz , Marta Pawlowska-Olszewska , Joanna Kruk-Bachonko , Radoslaw Radzki , Marek Bienko , Tymoteusz Slowik , Tomasz Lübek , Adam Nogalski , Grazyna Ginalska

GPSeq reveals the radial organization of chromatin in the cell nucleus.

Nature biotechnology

Avec: Gabriele Girelli , Joaquin Custodio , Tomasz Kallas , Federico Agostini , Erik Wernersson , Bastiaan Spanjaard , Ana Mota , Solrun Kolbeinsdottir , Eleni Gelali , Nicola Crosetto , Magda Bienko

RNA gradients: Shapers of 3D genome architecture.

Current opinion in cell biology

Avec: Britta A M Bouwman , Nicola Crosetto , Magda Bienko

Lipoic acid (LA) dose-dependently protects bone losses in the mandible of rats during the development of osteopenia by inhibiting oxidative stress and promoting bone formation.

Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie

Avec: Radoslaw Piotr Radzki , Marek Bienko , Dariusz Wolski , Tomasz Oniszczuk , Agnieszka Radzka-Pogoda , Pawel Polak , Andrzej Borzecki , Mateusz Stasiak

Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells.

Nature communications

Avec: Marcel Tarbier , Sebastian D Mackowiak , João Frade , Silvina Catuara-Solarz , Inna Biryukova , Eleni Gelali , Diego Bárcena Menéndez , Luis Zapata , Stephan Ossowski , Magda Bienko , Caroline J Gallant , Marc R Friedländer

An atlas of endogenous DNA double-strand breaks arising during human neural cell fate determination.

Scientific data

Avec: Roberto Ballarino , Britta A M Bouwman , Federico Agostini , Luuk Harbers , Constantin Diekmann , Erik Wernersson , Magda Bienko , Nicola Crosetto

Radial Organization in the Mammalian Nucleus.

Frontiers in genetics

Avec: Nicola Crosetto , Magda Bienko

CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples.

Nature communications

Avec: Xiaolu Zhang , Silvano Garnerone , Michele Simonetti , Luuk Harbers , Marcin Nicoś , Reza Mirzazadeh , Tiziana Venesio , Anna Sapino , Johan Hartman , Caterina Marchiò , Magda Bienko , Nicola Crosetto

Human skin long noncoding RNA WAKMAR1 regulates wound healing by enhancing keratinocyte migration.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Dongqing Li , Lara Kular , Manika Vij , Eva K Herter , Xi Li , Aoxue Wang , Tongbin Chu , Maria-Alexandra Toma , Letian Zhang , Eleni Liapi , Ana Mota , Lennart Blomqvist , Irène Gallais Sérézal , Ola Rollman , Jakob D Wikstrom , Magda Bienko , David Berglund , Mona Ståhle , Pehr Sommar , Maja Jagodic , Ning Xu Landén

piRNAs initiate transcriptional silencing of spermatogenic genes during C. elegans germline development.

Developmental cell

Avec: Eric Cornes , Loan Bourdon , Meetali Singh , Florian Mueller , Piergiuseppe Quarato , Erik Wernersson , Magda Bienko , Blaise Li , Germano Cecere

Simultaneous visualization of DNA loci in single cells by combinatorial multi-color iFISH.

Scientific data

Avec: Ana Mota , Maud Schweitzer , Erik Wernersson , Nicola Crosetto , Magda Bienko

The era of 3D and spatial genomics.

Trends in genetics : TIG

Avec: Britta A M Bouwman , Nicola Crosetto , Magda Bienko

Osteotropic Effect of Parenteral Obesity in Programmed Male Rats Fed a Calorically Differentiated Diet during Growth and Development.

Animals : an open access journal from MDPI

Avec: Radoslaw Piotr Radzki , Marek Bienko , Dariusz Wolski , Pawel Polak , Kinga Topolska , Mateusz Wereszczynski

A GC-centered view of 3D genome organization.

Current opinion in genetics & development

Avec: Britta Am Bouwman , Nicola Crosetto , Magda Bienko

Separation of transcriptional repressor and activator functions in Drosophila HDAC3.

Development (Cambridge, England)

Avec: Min Tang , Isabel Regadas , Sergey Belikov , Olga Shilkova , Lei Xu , Erik Wernersson , Xuewen Liu , Hongmei Wu , Magda Bienko , Mattias Mannervik

Compartmentalizing damaged DNA: A double-edged sword.

Molecular cell

Avec: Emily Georgiades , Nicola Crosetto , Magda Bienko

High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue.

Nature communications

Avec: Ning Zhang , Luuk Harbers , Michele Simonetti , Constantin Diekmann , Quentin Verron , Enrico Berrino , Sara E Bellomo , Gabriel M C Longo , Michael Ratz , Niklas Schultz , Firas Tarish , Peng Su , Bo Han , Wanzhong Wang , Sofia Onorato , Dora Grassini , Roberto Ballarino , Silvia Giordano , Qifeng Yang , Anna Sapino , Jonas Frisén , Kanar Alkass , Henrik Druid , Vassilis Roukos , Thomas Helleday , Caterina Marchiò , Magda Bienko , Nicola Crosetto

scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells.

Nature communications

Avec: Jinxin Phaedo Chen , Constantin Diekmann , Honggui Wu , Chong Chen , Giulia Della Chiara , Enrico Berrino , Konstantinos L Georgiadis , Britta A M Bouwman , Mohit Virdi , Luuk Harbers , Sara Erika Bellomo , Caterina Marchiò , Magda Bienko , Nicola Crosetto

What tool or method do you wish existed?

Cell

Avec: Yvonne Y Chen , Charles L Evavold , Matthias Mann , Emily R Davenport , Margaret McFall-Ngai , Magda Bienko , Hiroki R Ueda , Lin Tian , Nikki Tjahjono , Polina Anikeeva , Jun-Jie Gogo Liu , Tara L Deans , Xiaohua Shen

Réseau de co-auteurs

Nicola Crosetto 21 collaborations

Erik Wernersson 8 collaborations

Luuk Harbers 8 collaborations

Federico Agostini 6 collaborations

Ana Mota 5 collaborations

Marek Bienko 5 collaborations

Britta A M Bouwman 5 collaborations

Eleni Gelali 4 collaborations

Michele Simonetti 4 collaborations

Joaquin Custodio 3 collaborations

Gabriele Girelli 3 collaborations

Radoslaw Piotr Radzki 3 collaborations

Dariusz Wolski 3 collaborations

Pawel Polak 3 collaborations

Enrico Berrino 3 collaborations

Anna Sapino 3 collaborations

Roberto Ballarino 3 collaborations

Constantin Diekmann 3 collaborations

Caterina Marchiò 3 collaborations

Mats Nilsson 2 collaborations

Maud Schweitzer 2 collaborations

Reza Mirzazadeh 2 collaborations

Ning Zhang 2 collaborations

Jinxin Phaedo Chen 2 collaborations

Silvano Garnerone 2 collaborations

Vassilis Roukos 2 collaborations

Kinga Topolska 2 collaborations

Marcin Nicoś 2 collaborations

Xiaolu Zhang 2 collaborations

Giulia Della Chiara 2 collaborations

Mohit Virdi 2 collaborations

Quentin Verron 2 collaborations

Michaela Asp 1 collaboration

Stefania Giacomello 1 collaboration

Ludvig Larsson 1 collaboration

Chenglin Wu 1 collaboration

Daniel Fürth 1 collaboration

Xiaoyan Qian 1 collaboration

Eva Wärdell 1 collaboration

Johan Reimegård 1 collaboration

Fredrik Salmén 1 collaboration

Cecilia Österholm 1 collaboration

Patrik L Ståhl 1 collaboration

Erik Sundström 1 collaboration

Elisabet Åkesson 1 collaboration

Olaf Bergmann 1 collaboration

Agneta Månsson-Broberg 1 collaboration

Christer Sylvén 1 collaboration

Joakim Lundeberg 1 collaboration

Masahiro Matsumoto 1 collaboration

Katalin Ferenc 1 collaboration

Xinge Li 1 collaboration

John P Schell 1 collaboration

Fredrik Lanner 1 collaboration

Monika Ostapiuk 1 collaboration

Malgorzata Manastyrska 1 collaboration

Aleksandra Kimicka 1 collaboration

Joanna Wolska 1 collaboration

Maria Grazia Milia 1 collaboration

Silvia Brossa 1 collaboration

Thi Thu Huong Nguyen 1 collaboration

Francesco Cerutti 1 collaboration

Antonino Sottile 1 collaboration

Valeria Ghisetti 1 collaboration

Simona Pedrotti 1 collaboration

Ilaria Castiglioni 1 collaboration

Cynthia Perez-Estrada 1 collaboration

Linxuan Zhao 1 collaboration

Marcin Nicos 1 collaboration

Dimitri Poddighe 1 collaboration

Giuseppe Petrosino 1 collaboration

Henrike J Gothe 1 collaboration

Sergi Sayols 1 collaboration

Andreas E Moor 1 collaboration

Shalev Itzkovitz 1 collaboration

Paweł Ptaszek 1 collaboration

Adam Florkiewicz 1 collaboration

Radoslaw P Radzki 1 collaboration

Agnieszka Filipiak-Florkiewicz 1 collaboration

Enrico Patrucco 1 collaboration

Maximilian Kramer-Drauberg 1 collaboration

Claudia Voena 1 collaboration

Anna Kowalczyk 1 collaboration

Aleksandra Bożyk 1 collaboration

Rafał Pęksa 1 collaboration

Bożena Jarosz 1 collaboration

Justyna Szumiło 1 collaboration

Monika Żuk 1 collaboration

Bartosz Wasąg 1 collaboration

Katarzyna Reszka 1 collaboration

Renata Duchnowska 1 collaboration

Janusz Milanowski 1 collaboration

Roberto Chiarle 1 collaboration

Paweł Krawczyk 1 collaboration

Jacek Jassem 1 collaboration

Chiara Ambrogio 1 collaboration

Francesca Mastropasqua 1 collaboration

Marika Oksanen 1 collaboration

Cristina Soldini 1 collaboration

Shemim Alatar 1 collaboration

Abishek Arora 1 collaboration

Maya Molinari 1 collaboration

Axel Poulet 1 collaboration

Michelle Watts 1 collaboration

Ielyzaveta Rabkina 1 collaboration

Martin Becker 1 collaboration

Danyang Li 1 collaboration

Britt-Marie Anderlid 1 collaboration

Johan Isaksson 1 collaboration

Karl Lundin Remnelius 1 collaboration

Mohsen Moslem 1 collaboration

Yannick Jacob 1 collaboration

Anna Falk 1 collaboration

Emanuela Santini 1 collaboration

Anders Borgkvist 1 collaboration

Sven Bölte 1 collaboration

Kristiina Tammimies 1 collaboration

Carlos Jiménez 1 collaboration

Joanna Kacperczyk-Bartnik 1 collaboration

Pawel Bartnik 1 collaboration

Justyna Teliga-Czajkowska 1 collaboration

Aneta Malinowska-Polubiec 1 collaboration

Agnieszka Dobrowolska-Redo 1 collaboration

Ewa Romejko-Wolniewicz 1 collaboration

Malgorzata Bienko 1 collaboration

Krzysztof Czajkowski 1 collaboration

Su Wang 1 collaboration

David Castillo 1 collaboration

Christoffer Mattsson Langseth 1 collaboration

Huy Q Nguyen 1 collaboration

Shyamtanu Chattoraj 1 collaboration

Anna Martinez Casals 1 collaboration

Hans Blom 1 collaboration

Emma Lundberg 1 collaboration

Marc A Marti-Renom 1 collaboration

Chao-Ting Wu 1 collaboration

Szymon Berezicki 1 collaboration

Xiaoze Li-Wang 1 collaboration

Katarina Gradin 1 collaboration

Christiane Peuckert 1 collaboration

Leszek Borkowski 1 collaboration

Mariusz Jojczuk 1 collaboration

Anna Belcarz 1 collaboration

Marta Pawlowska-Olszewska 1 collaboration

Joanna Kruk-Bachonko 1 collaboration

Radoslaw Radzki 1 collaboration

Tymoteusz Slowik 1 collaboration

Tomasz Lübek 1 collaboration

Adam Nogalski 1 collaboration

Grazyna Ginalska 1 collaboration

Tomasz Kallas 1 collaboration

Bastiaan Spanjaard 1 collaboration

Solrun Kolbeinsdottir 1 collaboration

Tomasz Oniszczuk 1 collaboration

Agnieszka Radzka-Pogoda 1 collaboration

Andrzej Borzecki 1 collaboration

Mateusz Stasiak 1 collaboration

Marcel Tarbier 1 collaboration

Sebastian D Mackowiak 1 collaboration

João Frade 1 collaboration

Silvina Catuara-Solarz 1 collaboration

Inna Biryukova 1 collaboration

Diego Bárcena Menéndez 1 collaboration

Luis Zapata 1 collaboration

Stephan Ossowski 1 collaboration

Caroline J Gallant 1 collaboration

Marc R Friedländer 1 collaboration

Tiziana Venesio 1 collaboration

Johan Hartman 1 collaboration

Dongqing Li 1 collaboration

Lara Kular 1 collaboration

Manika Vij 1 collaboration

Eva K Herter 1 collaboration

Xi Li 1 collaboration

Aoxue Wang 1 collaboration

Tongbin Chu 1 collaboration

Maria-Alexandra Toma 1 collaboration

Letian Zhang 1 collaboration

Eleni Liapi 1 collaboration

Lennart Blomqvist 1 collaboration

Irène Gallais Sérézal 1 collaboration

Ola Rollman 1 collaboration

Jakob D Wikstrom 1 collaboration

David Berglund 1 collaboration

Mona Ståhle 1 collaboration

Pehr Sommar 1 collaboration

Maja Jagodic 1 collaboration

Ning Xu Landén 1 collaboration

Eric Cornes 1 collaboration

Loan Bourdon 1 collaboration

Meetali Singh 1 collaboration

Florian Mueller 1 collaboration

Piergiuseppe Quarato 1 collaboration

Blaise Li 1 collaboration

Germano Cecere 1 collaboration

Mateusz Wereszczynski 1 collaboration

Britta Am Bouwman 1 collaboration

Min Tang 1 collaboration

Isabel Regadas 1 collaboration

Sergey Belikov 1 collaboration

Olga Shilkova 1 collaboration

Lei Xu 1 collaboration

Xuewen Liu 1 collaboration

Hongmei Wu 1 collaboration

Mattias Mannervik 1 collaboration

Emily Georgiades 1 collaboration

Sara E Bellomo 1 collaboration

Gabriel M C Longo 1 collaboration

Michael Ratz 1 collaboration

Niklas Schultz 1 collaboration

Firas Tarish 1 collaboration

Peng Su 1 collaboration

Bo Han 1 collaboration

Wanzhong Wang 1 collaboration

Sofia Onorato 1 collaboration

Dora Grassini 1 collaboration

Silvia Giordano 1 collaboration

Qifeng Yang 1 collaboration

Jonas Frisén 1 collaboration

Kanar Alkass 1 collaboration

Henrik Druid 1 collaboration

Thomas Helleday 1 collaboration

Honggui Wu 1 collaboration

Chong Chen 1 collaboration

Konstantinos L Georgiadis 1 collaboration

Sara Erika Bellomo 1 collaboration

Yvonne Y Chen 1 collaboration

Charles L Evavold 1 collaboration

Matthias Mann 1 collaboration

Emily R Davenport 1 collaboration

Margaret McFall-Ngai 1 collaboration

Hiroki R Ueda 1 collaboration

Lin Tian 1 collaboration

Nikki Tjahjono 1 collaboration

Polina Anikeeva 1 collaboration

Jun-Jie Gogo Liu 1 collaboration

Tara L Deans 1 collaboration

Xiaohua Shen 1 collaboration