Marc Hafner

Affiliations

Department of Bioinformatics and Computational Biology, Genentech, South San Francisco, CA 94080, USA.

Publications (13)

Therapeutic Ligands Antagonize Estrogen Receptor Function by Impairing Its Mobility.

Cell

Avec: Jane Guan , Wei Zhou , Marc Hafner , Robert A Blake , Cecile Chalouni , Irene P Chen , Tom De Bruyn , Jennifer M Giltnane , Steven J Hartman , Amy Heidersbach , Rene Houtman , Ellen Ingalla , Lorn Kategaya , Tracy Kleinheinz , Jun Li , Scott E Martin , Zora Modrusan , Michelle Nannini , Jason Oeh , Savita Ubhayakar , Xiaojing Wang , Ingrid E Wertz , Amy Young , Mamie Yu , Deepak Sampath , Jeffrey H Hager , Lori S Friedman , Anneleen Daemen , Ciara Metcalfe

A novel spheroid-based co-culture model mimics loss of keratinocyte differentiation, melanoma cell invasion, and drug-induced selection of ABCB5-expressing cells.

BMC cancer

Avec: Julia Klicks , Christoph Maßlo , Andreas Kluth , Rüdiger Rudolf , Mathias Hafner

Bone Sialoprotein Shows Enhanced Expression in Early, High-Proliferation Stages of Three-Dimensional Spheroid Cell Cultures of Breast Cancer Cell Line MDA-MB-231.

Frontiers in oncology

Avec: Valeh Rustamov , Florian Keller , Julia Klicks , Mathias Hafner , Rüdiger Rudolf

DHX36 prevents the accumulation of translationally inactive mRNAs with G4-structures in untranslated regions.

Nature communications

Avec: Markus Sauer , Stefan A Juranek , James Marks , Alessio De Magis , Hinke G Kazemier , Daniel Hilbig , Daniel Benhalevy , Xiantao Wang , Markus Hafner , Katrin Paeschke

The p53-induced RNA-binding protein ZMAT3 is a splicing regulator that inhibits the splicing of oncogenic CD44 variants in colorectal carcinoma.

Genes & development

Avec: Bruna R Muys , Dimitrios G Anastasakis , Duncan Claypool , Lörinc Pongor , Xiao Ling Li , Ioannis Grammatikakis , Minxue Liu , Xiantao Wang , Kannanganattu V Prasanth , Mirit I Aladjem , Ashish Lal , Markus Hafner

PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.

Methods in molecular biology (Clifton, N.J.)

Avec: Charles Danan , Sudhir Manickavel , Markus Hafner

A multi-disciplinary approach to estimate the medium-term impact of COVID-19 on transport and energy: A case study for Italy.

Energy (Oxford, England)

Avec: Davide Bazzana , Jed J Cohen , Nicolò Golinucci , Manfred Hafner , Michel Noussan , Johannes Reichl , Matteo Vincenzo Rocco , Alessandro Sciullo , Sergio Vergalli

Estimating the global economic benefits of physically active populations over 30 years (2020-2050).

British journal of sports medicine

Avec: Marco Hafner , Erez Yerushalmi , Martin Stepanek , William Phillips , Jack Pollard , Advait Deshpande , Michael Whitmore , Francois Millard , Shaun Subel , Christian van Stolk

POFUT1 mRNA expression as an independent prognostic parameter in muscle-invasive bladder cancer.

Translational oncology

Avec: Sarah Wahby , Jonas Jarczyk , Alexander Fierek , Jakob Heinkele , Cleo-Aron Weis , Markus Eckstein , Thomas Martini , Stefan Porubsky , Mathias Hafner , Philipp Erben

RNA Externalized by Neutrophil Extracellular Traps Promotes Inflammatory Pathways in Endothelial Cells.

Arthritis & rheumatology (Hoboken, N.J.)

Avec: Luz P Blanco , Xinghao Wang , Philip M Carlucci , Jose Jiram Torres-Ruiz , Jorge Romo-Tena , Hong-Wei Sun , Markus Hafner , Mariana J Kaplan

A non-radioactive, improved PAR-CLIP and small RNA cDNA library preparation protocol.

Nucleic acids research

Avec: Dimitrios G Anastasakis , Alexis Jacob , Parthena Konstantinidou , Kazuyuki Meguro , Duncan Claypool , Pavol Cekan , Astrid D Haase , Markus Hafner

Few-shot learning creates predictive models of drug response that translate from high-throughput screens to individual patients.

Nature cancer

Avec: Jianzhu Ma , Samson H Fong , Yunan Luo , Christopher J Bakkenist , John Paul Shen , Soufiane Mourragui , Lodewyk F A Wessels , Marc Hafner , Roded Sharan , Jian Peng , Trey Ideker

Matrin3 regulates mitotic spindle dynamics by controlling alternative splicing of CDC14B.

Cell reports

Avec: Bruna R Muys , Roshan L Shrestha , Dimitrios G Anastasakis , Lorinc Pongor , Xiao Ling Li , Ioannis Grammatikakis , Ahsan Polash , Raj Chari , Myriam Gorospe , Curtis C Harris , Mirit I Aladjem , Munira A Basrai , Markus Hafner , Ashish Lal

Réseau de co-auteurs

Markus Hafner 6 collaborations

Mathias Hafner 3 collaborations

Dimitrios G Anastasakis 3 collaborations

Julia Klicks 2 collaborations

Rüdiger Rudolf 2 collaborations

Xiantao Wang 2 collaborations

Bruna R Muys 2 collaborations

Duncan Claypool 2 collaborations

Xiao Ling Li 2 collaborations

Ioannis Grammatikakis 2 collaborations

Mirit I Aladjem 2 collaborations

Ashish Lal 2 collaborations

Jane Guan 1 collaboration

Wei Zhou 1 collaboration

Robert A Blake 1 collaboration

Cecile Chalouni 1 collaboration

Irene P Chen 1 collaboration

Tom De Bruyn 1 collaboration

Jennifer M Giltnane 1 collaboration

Steven J Hartman 1 collaboration

Amy Heidersbach 1 collaboration

Rene Houtman 1 collaboration

Ellen Ingalla 1 collaboration

Lorn Kategaya 1 collaboration

Tracy Kleinheinz 1 collaboration

Jun Li 1 collaboration

Scott E Martin 1 collaboration

Zora Modrusan 1 collaboration

Michelle Nannini 1 collaboration

Jason Oeh 1 collaboration

Savita Ubhayakar 1 collaboration

Xiaojing Wang 1 collaboration

Ingrid E Wertz 1 collaboration

Amy Young 1 collaboration

Mamie Yu 1 collaboration

Deepak Sampath 1 collaboration

Jeffrey H Hager 1 collaboration

Lori S Friedman 1 collaboration

Anneleen Daemen 1 collaboration

Ciara Metcalfe 1 collaboration

Christoph Maßlo 1 collaboration

Andreas Kluth 1 collaboration

Valeh Rustamov 1 collaboration

Florian Keller 1 collaboration

Markus Sauer 1 collaboration

Stefan A Juranek 1 collaboration

James Marks 1 collaboration

Alessio De Magis 1 collaboration

Hinke G Kazemier 1 collaboration

Daniel Hilbig 1 collaboration

Daniel Benhalevy 1 collaboration

Katrin Paeschke 1 collaboration

Lörinc Pongor 1 collaboration

Minxue Liu 1 collaboration

Kannanganattu V Prasanth 1 collaboration

Charles Danan 1 collaboration

Sudhir Manickavel 1 collaboration

Davide Bazzana 1 collaboration

Jed J Cohen 1 collaboration

Nicolò Golinucci 1 collaboration

Manfred Hafner 1 collaboration

Michel Noussan 1 collaboration

Johannes Reichl 1 collaboration

Matteo Vincenzo Rocco 1 collaboration

Alessandro Sciullo 1 collaboration

Sergio Vergalli 1 collaboration

Marco Hafner 1 collaboration

Erez Yerushalmi 1 collaboration

Martin Stepanek 1 collaboration

William Phillips 1 collaboration

Jack Pollard 1 collaboration

Advait Deshpande 1 collaboration

Michael Whitmore 1 collaboration

Francois Millard 1 collaboration

Shaun Subel 1 collaboration

Christian van Stolk 1 collaboration

Sarah Wahby 1 collaboration

Jonas Jarczyk 1 collaboration

Alexander Fierek 1 collaboration

Jakob Heinkele 1 collaboration

Cleo-Aron Weis 1 collaboration

Markus Eckstein 1 collaboration

Thomas Martini 1 collaboration

Stefan Porubsky 1 collaboration

Philipp Erben 1 collaboration

Luz P Blanco 1 collaboration

Xinghao Wang 1 collaboration

Philip M Carlucci 1 collaboration

Jose Jiram Torres-Ruiz 1 collaboration

Jorge Romo-Tena 1 collaboration

Hong-Wei Sun 1 collaboration

Mariana J Kaplan 1 collaboration

Alexis Jacob 1 collaboration

Parthena Konstantinidou 1 collaboration

Kazuyuki Meguro 1 collaboration

Pavol Cekan 1 collaboration

Astrid D Haase 1 collaboration

Jianzhu Ma 1 collaboration

Samson H Fong 1 collaboration

Yunan Luo 1 collaboration

Christopher J Bakkenist 1 collaboration

John Paul Shen 1 collaboration

Soufiane Mourragui 1 collaboration

Lodewyk F A Wessels 1 collaboration

Roded Sharan 1 collaboration

Jian Peng 1 collaboration

Trey Ideker 1 collaboration

Roshan L Shrestha 1 collaboration

Lorinc Pongor 1 collaboration

Ahsan Polash 1 collaboration

Raj Chari 1 collaboration

Myriam Gorospe 1 collaboration

Curtis C Harris 1 collaboration

Munira A Basrai 1 collaboration