Simona Capponi

Affiliations

German Cancer Consortium (DKTK) partner site Freiburg, German Cancer Research, Center (DKFZ) and Department of Urology, Medical Center-University of Freiburg, 79106, Freiburg, Germany.

Publications (24)

Co-translational assembly of mammalian nuclear multisubunit complexes.

Nature communications

Avec: Ivanka Kamenova , Pooja Mukherjee , Sascha Conic , Florian Mueller , Farrah El-Saafin , Paul Bardot , Jean-Marie Garnier , Doulaye Dembele , Simona Capponi , H T Marc Timmers , Stéphane D Vincent , László Tora

Characterization of the Features of Water Inside the SecY Translocon.

The Journal of membrane biology

Avec: Sara Capponi

Predicting Epitope Candidates for SARS-CoV-2.

Viruses

Avec: Akshay Agarwal , Kristen L Beck , Sara Capponi , Mark Kunitomi , Gowri Nayar , Edward Seabolt , Gandhar Mahadeshwar , Simone Bianco , Vandana Mukherjee , James H Kaufman

Real-world application of the pediatric Glucocorticoid Toxicity Index in childhood-onset lupus.

Seminars in arthritis and rheumatism

Avec: Emily Zhang , Sarah Capponi , Rebecca Scobell , Gabrielle Alonzi , Madeline Hlobik , Ankana Daga , Esra Meidan , Holly Wobma , Liyoung Kim , Lauren A Henderson , Siobhan Case , Peter A Nigrovic , John H Stone , Karen H Costenbader , Mary Beth F Son , Joyce C Chang

A multiscale model of mechanotransduction by the ankyrin chains of the NOMPC channel.

The Journal of general physiology

Avec: David Argudo , Sara Capponi , Neville P Bethel , Michael Grabe

Missense variants in TAF1 and developmental phenotypes: challenges of determining pathogenicity.

Human mutation

Avec: Hanyin Cheng , Simona Capponi , Emma Wakeling , Elaine Marchi , Quan Li , Mengge Zhao , Chunhua Weng , Piatek G Stefan , Helena Ahlfors , Robert Kleyner , Alan Rope , Aimé Lumaka , Prosper Lukusa , Koenraad Devriendt , Joris Vermeesch , Jennifer E Posey , Elizabeth E Palmer , Lucinda Murray , Eyby Leon , Jullianne Diaz , Lisa Worgan , Amalia Mallawaarachchi , Julie Vogt , Sonja A de Munnik , Lauren Dreyer , Gareth Baynam , Lisa Ewans , Zornitza Stark , Sebastian Lunke , Ana R Gonçalves , Gabriela Soares , Jorge Oliveira , Emily Fassi , Marcia Willing , Jeff L Waugh , Laurence Faivre , Jean-Baptiste Riviere , Sebastien Moutton , Shehla Mohammed , Katelyn Payne , Laurence Walsh , Amber Begtrup , Maria J Guillen Sacoto , Ganka Douglas , Nora Alexander , Michael F Buckley , Paul R Mark , Lesley C Adès , Sarah A Sandaradura , James R Lupski , Tony Roscioli , Pankaj B Agrawal , Antonie D Kline , Auteur inconnu , Kai Wang , H T Marc Timmers , Gholson J Lyon

Examining the interplay between face mask usage, asymptomatic transmission, and social distancing on the spread of COVID-19.

Scientific reports

Avec: Adam Catching , Sara Capponi , Ming Te Yeh , Simone Bianco , Raul Andino

Decoding CAR T cell phenotype using combinatorial signaling motif libraries and machine learning.

Science (New York, N.Y.)

Avec: Kyle G Daniels , Shangying Wang , Milos S Simic , Hersh K Bhargava , Sara Capponi , Yurie Tonai , Wei Yu , Simone Bianco , Wendell A Lim

AI in cellular engineering and reprogramming.

Biophysical journal

Avec: Sara Capponi , Shangying Wang

A High-Throughput Method for Quantifying

Toxics

Avec: Andreana Gomez , Sergio Gonzalez , Ashwini Oke , Jiayu Luo , Johnny B Duong , Raymond M Esquerra , Thomas Zimmerman , Sara Capponi , Jennifer C Fung , Todd G Nystul

Structural Relaxation Processes and Collective Dynamics of Water in Biomolecular Environments.

The journal of physical chemistry. B

Avec: Sara Capponi , Stephen H White , Douglas J Tobias , Matthias Heyden

K

Science advances

Avec: Marco Lolicato , Andrew M Natale , Fayal Abderemane-Ali , David Crottès , Sara Capponi , Ramona Duman , Armin Wagner , John M Rosenberg , Michael Grabe , Daniel L Minor

Dissection of

Brain communications

Avec: Simona Capponi , Nadja Stöffler , Ellen B Penney , Karen Grütz , Sheikh Nizamuddin , Marit W Vermunt , Bas Castelijns , Cara Fernandez-Cerado , G Paul Legarda , M Salvie Velasco-Andrada , Edwin L Muñoz , Mark A Ang , Cid Czarina E Diesta , Menno P Creyghton , Christine Klein , D Cristopher Bragg , Peter De Rijk , H T Marc Timmers

A defective viral genome strategy elicits broad protective immunity against respiratory viruses.

Cell

Avec: Yinghong Xiao , Peter V Lidsky , Yuta Shirogane , Ranen Aviner , Chien-Ting Wu , Weiyi Li , Weihao Zheng , Dale Talbot , Adam Catching , Gilad Doitsh , Weiheng Su , Colby E Gekko , Arabinda Nayak , Joel D Ernst , Leonid Brodsky , Elia Brodsky , Elsa Rousseau , Sara Capponi , Simone Bianco , Robert Nakamura , Peter K Jackson , Judith Frydman , Raul Andino

A tradeoff between enterovirus A71 particle stability and cell entry.

Nature communications

Avec: Adam Catching , Ming Te Yeh , Simone Bianco , Sara Capponi , Raul Andino

A high-throughput method for quantifying

bioRxiv : the preprint server for biology

Avec: Andreana Gomez , Sergio Gonzalez , Ashwini Oke , Jiayu Luo , Johnny B Duong , Raymond M Esquerra , Thomas Zimmerman , Sara Capponi , Jennifer C Fung , Todd G Nystul

Mapping Attenuation Determinants in Enterovirus-D68.

Viruses

Avec: Ming Te Yeh , Sara Capponi , Adam Catching , Simone Bianco , Raul Andino

Comparison of Aortitis Versus Noninflammatory Aortic Aneurysms Among Patients Who Undergo Open Aortic Aneurysm Repair.

Arthritis & rheumatology (Hoboken, N.J.)

Avec: Laarni Quimson , Adam Mayer , Sarah Capponi , Bryan Rea , Rennie L Rhee

Vaping Associated Pulmonary Nontuberculous Mycobacteria.

Lung

Avec: Laura Chen , Raanan Arens , Ambika G Chidambaram , Sarah Capponi , Loor Alshawa , Tiffany A Claeys , Don Hayes , Richard T Robinson

AI-driven prediction of SARS-CoV-2 variant binding trends from atomistic simulations.

The European physical journal. E, Soft matter

Avec: Sara Capponi , Shangying Wang , Erik J Navarro , Simone Bianco

Harnessing the power of artificial intelligence to advance cell therapy.

Immunological reviews

Avec: Sara Capponi , Kyle G Daniels

ML-enhanced peroxisome capacity enables compartmentalization of multienzyme pathway.

Nature chemical biology

Avec: Jordan J Baker , Jie Shi , Shangying Wang , Elena M Mujica , Simone Bianco , Sara Capponi , John E Dueber

Neuronal-specific microexon splicing of

RNA biology

Avec: Simona Capponi , Nadja Stöffler , Manuel Irimia , Frederik M A Van Schaik , Mercedes M Ondik , Martin L Biniossek , Lisa Lehmann , Julia Mitschke , Marit W Vermunt , Menno P Creyghton , Ann M Graybiel , Thomas Reinheckel , Oliver Schilling , Benjamin J Blencowe , Jill R Crittenden , H Th Marc Timmers

SU(3)_{1} Chiral Spin Liquid on the Square Lattice: A View from Symmetric Projected Entangled Pair States.

Physical review letters

Avec: Ji-Yao Chen , Sylvain Capponi , Alexander Wietek , Matthieu Mambrini , Norbert Schuch , Didier Poilblanc

Réseau de co-auteurs

Sara Capponi 16 collaborations

Simone Bianco 8 collaborations

Adam Catching 4 collaborations

Raul Andino 4 collaborations

Shangying Wang 4 collaborations

H T Marc Timmers 3 collaborations

Sarah Capponi 3 collaborations

Ming Te Yeh 3 collaborations

Michael Grabe 2 collaborations

Kyle G Daniels 2 collaborations

Andreana Gomez 2 collaborations

Sergio Gonzalez 2 collaborations

Ashwini Oke 2 collaborations

Jiayu Luo 2 collaborations

Johnny B Duong 2 collaborations

Raymond M Esquerra 2 collaborations

Thomas Zimmerman 2 collaborations

Jennifer C Fung 2 collaborations

Todd G Nystul 2 collaborations

Nadja Stöffler 2 collaborations

Marit W Vermunt 2 collaborations

Menno P Creyghton 2 collaborations

Ivanka Kamenova 1 collaboration

Pooja Mukherjee 1 collaboration

Sascha Conic 1 collaboration

Florian Mueller 1 collaboration

Farrah El-Saafin 1 collaboration

Paul Bardot 1 collaboration

Jean-Marie Garnier 1 collaboration

Doulaye Dembele 1 collaboration

Stéphane D Vincent 1 collaboration

László Tora 1 collaboration

Akshay Agarwal 1 collaboration

Kristen L Beck 1 collaboration

Mark Kunitomi 1 collaboration

Gowri Nayar 1 collaboration

Edward Seabolt 1 collaboration

Gandhar Mahadeshwar 1 collaboration

Vandana Mukherjee 1 collaboration

James H Kaufman 1 collaboration

Emily Zhang 1 collaboration

Rebecca Scobell 1 collaboration

Gabrielle Alonzi 1 collaboration

Madeline Hlobik 1 collaboration

Ankana Daga 1 collaboration

Esra Meidan 1 collaboration

Holly Wobma 1 collaboration

Liyoung Kim 1 collaboration

Lauren A Henderson 1 collaboration

Siobhan Case 1 collaboration

Peter A Nigrovic 1 collaboration

John H Stone 1 collaboration

Karen H Costenbader 1 collaboration

Mary Beth F Son 1 collaboration

Joyce C Chang 1 collaboration

David Argudo 1 collaboration

Neville P Bethel 1 collaboration

Hanyin Cheng 1 collaboration

Emma Wakeling 1 collaboration

Elaine Marchi 1 collaboration

Quan Li 1 collaboration

Mengge Zhao 1 collaboration

Chunhua Weng 1 collaboration

Piatek G Stefan 1 collaboration

Helena Ahlfors 1 collaboration

Robert Kleyner 1 collaboration

Alan Rope 1 collaboration

Aimé Lumaka 1 collaboration

Prosper Lukusa 1 collaboration

Koenraad Devriendt 1 collaboration

Joris Vermeesch 1 collaboration

Jennifer E Posey 1 collaboration

Elizabeth E Palmer 1 collaboration

Lucinda Murray 1 collaboration

Eyby Leon 1 collaboration

Jullianne Diaz 1 collaboration

Lisa Worgan 1 collaboration

Amalia Mallawaarachchi 1 collaboration

Julie Vogt 1 collaboration

Sonja A de Munnik 1 collaboration

Lauren Dreyer 1 collaboration

Gareth Baynam 1 collaboration

Lisa Ewans 1 collaboration

Zornitza Stark 1 collaboration

Sebastian Lunke 1 collaboration

Ana R Gonçalves 1 collaboration

Gabriela Soares 1 collaboration

Jorge Oliveira 1 collaboration

Emily Fassi 1 collaboration

Marcia Willing 1 collaboration

Jeff L Waugh 1 collaboration

Laurence Faivre 1 collaboration

Jean-Baptiste Riviere 1 collaboration

Sebastien Moutton 1 collaboration

Shehla Mohammed 1 collaboration

Katelyn Payne 1 collaboration

Laurence Walsh 1 collaboration

Amber Begtrup 1 collaboration

Maria J Guillen Sacoto 1 collaboration

Ganka Douglas 1 collaboration

Nora Alexander 1 collaboration

Michael F Buckley 1 collaboration

Paul R Mark 1 collaboration

Lesley C Adès 1 collaboration

Sarah A Sandaradura 1 collaboration

James R Lupski 1 collaboration

Tony Roscioli 1 collaboration

Pankaj B Agrawal 1 collaboration

Antonie D Kline 1 collaboration

None None 1 collaboration

Kai Wang 1 collaboration

Gholson J Lyon 1 collaboration

Milos S Simic 1 collaboration

Hersh K Bhargava 1 collaboration

Yurie Tonai 1 collaboration

Wei Yu 1 collaboration

Wendell A Lim 1 collaboration

Stephen H White 1 collaboration

Douglas J Tobias 1 collaboration

Matthias Heyden 1 collaboration

Marco Lolicato 1 collaboration

Andrew M Natale 1 collaboration

Fayal Abderemane-Ali 1 collaboration

David Crottès 1 collaboration

Ramona Duman 1 collaboration

Armin Wagner 1 collaboration

John M Rosenberg 1 collaboration

Daniel L Minor 1 collaboration

Ellen B Penney 1 collaboration

Karen Grütz 1 collaboration

Sheikh Nizamuddin 1 collaboration

Bas Castelijns 1 collaboration

Cara Fernandez-Cerado 1 collaboration

G Paul Legarda 1 collaboration

M Salvie Velasco-Andrada 1 collaboration

Edwin L Muñoz 1 collaboration

Mark A Ang 1 collaboration

Cid Czarina E Diesta 1 collaboration

Christine Klein 1 collaboration

D Cristopher Bragg 1 collaboration

Peter De Rijk 1 collaboration

Yinghong Xiao 1 collaboration

Peter V Lidsky 1 collaboration

Yuta Shirogane 1 collaboration

Ranen Aviner 1 collaboration

Chien-Ting Wu 1 collaboration

Weiyi Li 1 collaboration

Weihao Zheng 1 collaboration

Dale Talbot 1 collaboration

Gilad Doitsh 1 collaboration

Weiheng Su 1 collaboration

Colby E Gekko 1 collaboration

Arabinda Nayak 1 collaboration

Joel D Ernst 1 collaboration

Leonid Brodsky 1 collaboration

Elia Brodsky 1 collaboration

Elsa Rousseau 1 collaboration

Robert Nakamura 1 collaboration

Peter K Jackson 1 collaboration

Judith Frydman 1 collaboration

Laarni Quimson 1 collaboration

Adam Mayer 1 collaboration

Bryan Rea 1 collaboration

Rennie L Rhee 1 collaboration

Laura Chen 1 collaboration

Raanan Arens 1 collaboration

Ambika G Chidambaram 1 collaboration

Loor Alshawa 1 collaboration

Tiffany A Claeys 1 collaboration

Don Hayes 1 collaboration

Richard T Robinson 1 collaboration

Erik J Navarro 1 collaboration

Jordan J Baker 1 collaboration

Jie Shi 1 collaboration

Elena M Mujica 1 collaboration

John E Dueber 1 collaboration

Manuel Irimia 1 collaboration

Frederik M A Van Schaik 1 collaboration

Mercedes M Ondik 1 collaboration

Martin L Biniossek 1 collaboration

Lisa Lehmann 1 collaboration

Julia Mitschke 1 collaboration

Ann M Graybiel 1 collaboration

Thomas Reinheckel 1 collaboration

Oliver Schilling 1 collaboration

Benjamin J Blencowe 1 collaboration

Jill R Crittenden 1 collaboration

H Th Marc Timmers 1 collaboration

Ji-Yao Chen 1 collaboration

Sylvain Capponi 1 collaboration

Alexander Wietek 1 collaboration

Matthieu Mambrini 1 collaboration

Norbert Schuch 1 collaboration

Didier Poilblanc 1 collaboration