Syed Nabeel-Shah

Affiliations

Department of Chemistry and Biology, Toronto Metropolitan University, 350 Victoria St, Toronto, M5B 2K3, Canada.
Donnelly Centre, University of Toronto, Toronto, M5S 3E1, Canada.
Department of Molecular Genetics, University of Toronto, Toronto, M5S 1A8, Canada.

Publications (19)

Multilevel interrogation of H3.3 reveals a primordial role in transcription regulation.

Epigenetics & chromatin

Avec: Syed Nabeel-Shah , Jyoti Garg , Kanwal Ashraf , Renu Jeyapala , Hyunmin Lee , Alexandra Petrova , James D Burns , Shuye Pu , Zhaolei Zhang , Jack F Greenblatt , Ronald E Pearlman , Jean-Philippe Lambert , Jeffrey Fillingham

C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.

Molecular cell

Avec: Syed Nabeel-Shah , Shuye Pu , James D Burns , Ulrich Braunschweig , Nujhat Ahmed , Giovanni L Burke , Hyunmin Lee , Ernest Radovani , Guoqing Zhong , Hua Tang , Edyta Marcon , Zhaolei Zhang , Timothy R Hughes , Benjamin J Blencowe , Jack F Greenblatt

The Med31 Conserved Component of the Divergent Mediator Complex in Tetrahymena thermophila Participates in Developmental Regulation.

Current biology : CB

Avec: Jyoti Garg , Alejandro Saettone , Syed Nabeel-Shah , Matthew Cadorin , Marcelo Ponce , Susanna Marquez , Shuye Pu , Jack Greenblatt , Jean-Philippe Lambert , Ronald E Pearlman , Jeffrey Fillingham

MKRN2 Physically Interacts with GLE1 to Regulate mRNA Export and Zebrafish Retinal Development.

Cell reports

Avec: Eric J Wolf , Amanda Miles , Eliza S Lee , Syed Nabeel-Shah , Jack F Greenblatt , Alexander F Palazzo , Vincent Tropepe , Andrew Emili

Identifying human pre-mRNA cleavage and polyadenylation factors by genome-wide CRISPR screens using a dual fluorescence readthrough reporter.

Nucleic acids research

Avec: Zuyao Ni , Nujhat Ahmed , Syed Nabeel-Shah , Xinghua Guo , Shuye Pu , Jingwen Song , Edyta Marcon , Giovanni L Burke , Amy Hin Yan Tong , Katherine Chan , Kevin C H Ha , Benjamin J Blencowe , Jason Moffat , Jack F Greenblatt

Functional Proteomics of Nuclear Proteins in

Genes

Avec: Alejandro Saettone , Syed Nabeel-Shah , Jyoti Garg , Jean-Philippe Lambert , Ronald E Pearlman , Jeffrey Fillingham

Functional characterization of RebL1 highlights the evolutionary conservation of oncogenic activities of the RBBP4/7 orthologue in Tetrahymena thermophila.

Nucleic acids research

Avec: Syed Nabeel-Shah , Jyoti Garg , Alejandro Saettone , Kanwal Ashraf , Hyunmin Lee , Suzanne Wahab , Nujhat Ahmed , Jacob Fine , Joanna Derynck , Shuye Pu , Marcelo Ponce , Edyta Marcon , Zhaolei Zhang , Jack F Greenblatt , Ronald E Pearlman , Jean-Philippe Lambert , Jeffrey Fillingham

Systematic exploration of dynamic splicing networks reveals conserved multistage regulators of neurogenesis.

Molecular cell

Avec: Hong Han , Andrew J Best , Ulrich Braunschweig , Nicholas Mikolajewicz , Jack Daiyang Li , Jonathan Roth , Fuad Chowdhury , Federica Mantica , Syed Nabeel-Shah , Guillermo Parada , Kevin R Brown , Dave O'Hanlon , Jiarun Wei , Yuxi Yao , Abdelrahman Abou Zid , Lim Caden Comsa , Mark Jen , Jenny Wang , Alessandro Datti , Thomas Gonatopoulos-Pournatzis , Robert J Weatheritt , Jack F Greenblatt , Jeffrey L Wrana , Manuel Irimia , Anne-Claude Gingras , Jason Moffat , Benjamin J Blencowe

A central chaperone-like role for 14-3-3 proteins in human cells.

Molecular cell

Avec: Dmitri Segal , Stefan Maier , Giovanni J Mastromarco , Wesley Wei Qian , Syed Nabeel-Shah , Hyunmin Lee , Gaelen Moore , Jessica Lacoste , Brett Larsen , Zhen-Yuan Lin , Abeeshan Selvabaskaran , Karen Liu , Craig Smibert , Zhaolei Zhang , Jack Greenblatt , Jian Peng , Hyun O Lee , Anne-Claude Gingras , Mikko Taipale

Exploring the Histone Acetylation Cycle in the Protozoan Model

Frontiers in cell and developmental biology

Avec: Suzanne Wahab , Alejandro Saettone , Syed Nabeel-Shah , Nora Dannah , Jeffrey Fillingham

Nucleus-specific linker histones Hho1 and Mlh1 form distinct protein interactions during growth, starvation and development in Tetrahymena thermophila.

Scientific reports

Avec: Syed Nabeel-Shah , Kanwal Ashraf , Alejandro Saettone , Jyoti Garg , Joanna Derynck , Jean-Philippe Lambert , Ronald E Pearlman , Jeffrey Fillingham

SARS-CoV-2 nucleocapsid protein binds host mRNAs and attenuates stress granules to impair host stress response.

iScience

Avec: Syed Nabeel-Shah , Hyunmin Lee , Nujhat Ahmed , Giovanni L Burke , Shaghayegh Farhangmehr , Kanwal Ashraf , Shuye Pu , Ulrich Braunschweig , Guoqing Zhong , Hong Wei , Hua Tang , Jianyi Yang , Edyta Marcon , Benjamin J Blencowe , Zhaolei Zhang , Jack F Greenblatt

Regulation of alternative polyadenylation by the C2H2-zinc-finger protein Sp1.

Molecular cell

Avec: Jingwen Song , Syed Nabeel-Shah , Shuye Pu , Hyunmin Lee , Ulrich Braunschweig , Zuyao Ni , Nujhat Ahmed , Edyta Marcon , Guoqing Zhong , Debashish Ray , Kevin C H Ha , Xinghua Guo , Zhaolei Zhang , Timothy R Hughes , Benjamin J Blencowe , Jack F Greenblatt

RNA-binding proteins that lack canonical RNA-binding domains are rarely sequence-specific.

Scientific reports

Avec: Debashish Ray , Kaitlin U Laverty , Arttu Jolma , Kate Nie , Reuben Samson , Sara E Pour , Cyrus L Tam , Niklas von Krosigk , Syed Nabeel-Shah , Mihai Albu , Hong Zheng , Gabrielle Perron , Hyunmin Lee , Hamed Najafabadi , Benjamin Blencowe , Jack Greenblatt , Quaid Morris , Timothy R Hughes

Proteomic Analysis of Histones H2A/H2B and Variant Hv1 in Tetrahymena thermophila Reveals an Ancient Network of Chaperones.

Molecular biology and evolution

Avec: Kanwal Ashraf , Syed Nabeel-Shah , Jyoti Garg , Alejandro Saettone , Joanna Derynck , Anne-Claude Gingras , Jean-Philippe Lambert , Ronald E Pearlman , Jeffrey Fillingham

RACS: rapid analysis of ChIP-Seq data for contig based genomes.

BMC bioinformatics

Avec: Alejandro Saettone , Marcelo Ponce , Syed Nabeel-Shah , Jeffrey Fillingham

Functional proteomics protocol for the identification of interaction partners in

STAR protocols

Avec: Syed Nabeel-Shah , Jyoti Garg , Pata-Eting Kougnassoukou Tchara , Ronald E Pearlman , Jean-Philippe Lambert , Jeffrey Fillingham

Revised iCLIP-seq Protocol for Profiling RNA-protein Interaction Sites at Individual Nucleotide Resolution in Living Cells.

Bio-protocol

Avec: Syed Nabeel-Shah , Jack F Greenblatt

Recruitment of the m

Genome biology

Avec: Syed Nabeel-Shah , Shuye Pu , Giovanni L Burke , Nujhat Ahmed , Ulrich Braunschweig , Shaghayegh Farhangmehr , Hyunmin Lee , Mingkun Wu , Zuyao Ni , Hua Tang , Guoqing Zhong , Edyta Marcon , Zhaolei Zhang , Benjamin J Blencowe , Jack F Greenblatt

Réseau de co-auteurs

Jack F Greenblatt 10 collaborations

Jeffrey Fillingham 9 collaborations

Hyunmin Lee 8 collaborations

Shuye Pu 8 collaborations

Jyoti Garg 7 collaborations

Zhaolei Zhang 7 collaborations

Ronald E Pearlman 7 collaborations

Jean-Philippe Lambert 7 collaborations

Alejandro Saettone 7 collaborations

Nujhat Ahmed 6 collaborations

Edyta Marcon 6 collaborations

Benjamin J Blencowe 6 collaborations

Kanwal Ashraf 5 collaborations

Ulrich Braunschweig 5 collaborations

Giovanni L Burke 4 collaborations

Guoqing Zhong 4 collaborations

Hua Tang 3 collaborations

Timothy R Hughes 3 collaborations

Marcelo Ponce 3 collaborations

Jack Greenblatt 3 collaborations

Zuyao Ni 3 collaborations

Joanna Derynck 3 collaborations

Anne-Claude Gingras 3 collaborations

James D Burns 2 collaborations

Xinghua Guo 2 collaborations

Jingwen Song 2 collaborations

Kevin C H Ha 2 collaborations

Jason Moffat 2 collaborations

Suzanne Wahab 2 collaborations

Shaghayegh Farhangmehr 2 collaborations

Debashish Ray 2 collaborations

Renu Jeyapala 1 collaboration

Alexandra Petrova 1 collaboration

Ernest Radovani 1 collaboration

Matthew Cadorin 1 collaboration

Susanna Marquez 1 collaboration

Eric J Wolf 1 collaboration

Amanda Miles 1 collaboration

Eliza S Lee 1 collaboration

Alexander F Palazzo 1 collaboration

Vincent Tropepe 1 collaboration

Andrew Emili 1 collaboration

Amy Hin Yan Tong 1 collaboration

Katherine Chan 1 collaboration

Jacob Fine 1 collaboration

Hong Han 1 collaboration

Andrew J Best 1 collaboration

Nicholas Mikolajewicz 1 collaboration

Jack Daiyang Li 1 collaboration

Jonathan Roth 1 collaboration

Fuad Chowdhury 1 collaboration

Federica Mantica 1 collaboration

Guillermo Parada 1 collaboration

Kevin R Brown 1 collaboration

Dave O'Hanlon 1 collaboration

Jiarun Wei 1 collaboration

Yuxi Yao 1 collaboration

Abdelrahman Abou Zid 1 collaboration

Lim Caden Comsa 1 collaboration

Mark Jen 1 collaboration

Jenny Wang 1 collaboration

Alessandro Datti 1 collaboration

Thomas Gonatopoulos-Pournatzis 1 collaboration

Robert J Weatheritt 1 collaboration

Jeffrey L Wrana 1 collaboration

Manuel Irimia 1 collaboration

Dmitri Segal 1 collaboration

Stefan Maier 1 collaboration

Giovanni J Mastromarco 1 collaboration

Wesley Wei Qian 1 collaboration

Gaelen Moore 1 collaboration

Jessica Lacoste 1 collaboration

Brett Larsen 1 collaboration

Zhen-Yuan Lin 1 collaboration

Abeeshan Selvabaskaran 1 collaboration

Karen Liu 1 collaboration

Craig Smibert 1 collaboration

Jian Peng 1 collaboration

Hyun O Lee 1 collaboration

Mikko Taipale 1 collaboration

Nora Dannah 1 collaboration

Hong Wei 1 collaboration

Jianyi Yang 1 collaboration

Kaitlin U Laverty 1 collaboration

Arttu Jolma 1 collaboration

Kate Nie 1 collaboration

Reuben Samson 1 collaboration

Sara E Pour 1 collaboration

Cyrus L Tam 1 collaboration

Niklas von Krosigk 1 collaboration

Mihai Albu 1 collaboration

Hong Zheng 1 collaboration

Gabrielle Perron 1 collaboration

Hamed Najafabadi 1 collaboration

Benjamin Blencowe 1 collaboration

Quaid Morris 1 collaboration

Pata-Eting Kougnassoukou Tchara 1 collaboration

Mingkun Wu 1 collaboration