V Lakis

Affiliations

Cancer Program, QIMR Berghofer Medical Research Institute, Brisbane, Australia.

Publications (16)

DNA methylation patterns identify subgroups of pancreatic neuroendocrine tumors with clinical association.

Communications biology

Avec: Vanessa Lakis , Rita T Lawlor , Felicity Newell , Ann-Marie Patch , Andrea Mafficini , Anguraj Sadanandam , Lambros T Koufariotis , Rebecca L Johnston , Conrad Leonard , Scott Wood , Borislav Rusev , Vincenzo Corbo , Claudio Luchini , Sara Cingarlini , Luca Landoni , Roberto Salvia , Michele Milella , David Chang , Peter Bailey , Nigel B Jamieson , Fraser Duthie , Marie-Claude Gingras , Donna M Muzny , David A Wheeler , Richard A Gibbs , Massimo Milione , Auteur inconnu , Auteur inconnu , Paolo Pederzoli , Jaswinder S Samra , Anthony J Gill , Amber L Johns , John V Pearson , Andrew V Biankin , Sean M Grimmond , Nicola Waddell , Katia Nones , Aldo Scarpa

Comparison of actionable events detected in cancer genomes by whole-genome sequencing, in silico whole-exome and mutation panels.

ESMO open

Avec: P Ramarao-Milne , O Kondrashova , A-M Patch , K Nones , L T Koufariotis , F Newell , V Addala , V Lakis , O Holmes , C Leonard , S Wood , Q Xu , P Mukhopadhyay , M M Naeini , D Steinfort , J P Williamson , M Bint , C Pahoff , P T Nguyen , S Twaddell , D Arnold , C Grainge , F Basirzadeh , D Fielding , A J Dalley , H Chittoory , P T Simpson , L G Aoude , V F Bonazzi , K Patel , A P Barbour , D A Fennell , B W Robinson , J Creaney , G Hollway , J V Pearson , N Waddell

Whole-genome sequencing of acral melanoma reveals genomic complexity and diversity.

Nature communications

Avec: Felicity Newell , James S Wilmott , Peter A Johansson , Katia Nones , Venkateswar Addala , Pamela Mukhopadhyay , Natasa Broit , Carol M Amato , Robert Van Gulick , Stephen H Kazakoff , Ann-Marie Patch , Lambros T Koufariotis , Vanessa Lakis , Conrad Leonard , Scott Wood , Oliver Holmes , Qinying Xu , Karl Lewis , Theresa Medina , Rene Gonzalez , Robyn P M Saw , Andrew J Spillane , Jonathan R Stretch , Robert V Rawson , Peter M Ferguson , Tristan J Dodds , John F Thompson , Georgina V Long , Mitchell P Levesque , William A Robinson , John V Pearson , Graham J Mann , Richard A Scolyer , Nicola Waddell , Nicholas K Hayward

Patient-derived xenograft models capture genomic heterogeneity in endometrial cancer.

Genome medicine

Avec: Vanessa F Bonazzi , Olga Kondrashova , Deborah Smith , Katia Nones , Asmerom T Sengal , Robert Ju , Leisl M Packer , Lambros T Koufariotis , Stephen H Kazakoff , Aimee L Davidson , Priya Ramarao-Milne , Vanessa Lakis , Felicity Newell , Rebecca Rogers , Claire Davies , James Nicklin , Andrea Garrett , Naven Chetty , Lewis Perrin , John V Pearson , Ann-Marie Patch , Nicola Waddell , Pamela M Pollock

Multiomic profiling of checkpoint inhibitor-treated melanoma: Identifying predictors of response and resistance, and markers of biological discordance.

Cancer cell

Avec: Felicity Newell , Ines Pires da Silva , Peter A Johansson , Alexander M Menzies , James S Wilmott , Venkateswar Addala , Matteo S Carlino , Helen Rizos , Katia Nones , Jarem J Edwards , Vanessa Lakis , Stephen H Kazakoff , Pamela Mukhopadhyay , Peter M Ferguson , Conrad Leonard , Lambros T Koufariotis , Scott Wood , Christian U Blank , John F Thompson , Andrew J Spillane , Robyn P M Saw , Kerwin F Shannon , John V Pearson , Graham J Mann , Nicholas K Hayward , Richard A Scolyer , Nicola Waddell , Georgina V Long

Comprehensive genomic and tumour immune profiling reveals potential therapeutic targets in malignant pleural mesothelioma.

Genome medicine

Avec: Jenette Creaney , Ann-Marie Patch , Venkateswar Addala , Sophie A Sneddon , Katia Nones , Ian M Dick , Y C Gary Lee , Felicity Newell , Ebony J Rouse , Marjan M Naeini , Olga Kondrashova , Vanessa Lakis , Apostolos Nakas , David Waller , Annabel Sharkey , Pamela Mukhopadhyay , Stephen H Kazakoff , Lambros T Koufariotis , Aimee L Davidson , Priya Ramarao-Milne , Oliver Holmes , Qinying Xu , Conrad Leonard , Scott Wood , Sean M Grimmond , Raphael Bueno , Dean A Fennell , John V Pearson , Bruce W Robinson , Nicola Waddell

Whole Genome Sequencing in Advanced Lung Cancer can be Performed Using Diff-Quik Cytology Smears Derived from Endobronchial Ultrasound, Transbronchial Needle Aspiration (EBUS TBNA).

Lung

Avec: David Fielding , Andrew J Dalley , Mahendra Singh , Lakshmy Nandakumar , Vanessa Lakis , Haarika Chittoory , David Fairbairn , Kaltin Ferguson , Farzad Bashirzadeh , Michael Bint , Carl Pahoff , Jung Hwa Son , Alan Hodgson , John V Pearson , Nicola Waddell , Sunil R Lakhani , Gunter Hartel , Katia Nones , Peter T Simpson

Comparative Genomics Provides Etiologic and Biological Insight into Melanoma Subtypes.

Cancer discovery

Avec: Felicity Newell , Peter A Johansson , James S Wilmott , Katia Nones , Vanessa Lakis , Antonia L Pritchard , Serigne N Lo , Robert V Rawson , Stephen H Kazakoff , Andrew J Colebatch , Lambros T Koufariotis , Peter M Ferguson , Scott Wood , Conrad Leonard , Matthew H Law , Kelly M Brooks , Natasa Broit , Jane M Palmer , Kasey L Couts , Ismael A Vergara , Georgina V Long , Andrew P Barbour , Omgo E Nieweg , Brindha Shivalingam , William A Robinson , Jonathan R Stretch , Andrew J Spillane , Robyn P M Saw , Kerwin F Shannon , John F Thompson , Graham J Mann , John V Pearson , Richard A Scolyer , Nicola Waddell , Nicholas K Hayward

Evaluating Diff-Quik cytology smears for large-panel mutation testing in lung cancer-Predicting DNA content and success with low-malignant-cellularity samples.

Cancer cytopathology

Avec: David I Fielding , Andrew J Dalley , Mahendra Singh , Lakshmy Nandakumar , Vanessa Lakis , Haarika Chittoory , David Fairbairn , Ann-Marie Patch , Stephen H Kazakoff , Kaltin Ferguson , Farzad Bashirzadeh , Michael Bint , Carl Pahoff , Jung Hwa Son , Alan Hodgson , Sowmya Sharma , Nicola Waddell , Sunil R Lakhani , Gunter Hartel , Katia Nones , Peter T Simpson

Multi-omic features of oesophageal adenocarcinoma in patients treated with preoperative neoadjuvant therapy.

Nature communications

Avec: Marjan M Naeini , Felicity Newell , Lauren G Aoude , Vanessa F Bonazzi , Kalpana Patel , Guy Lampe , Lambros T Koufariotis , Vanessa Lakis , Venkateswar Addala , Olga Kondrashova , Rebecca L Johnston , Sowmya Sharma , Sandra Brosda , Oliver Holmes , Conrad Leonard , Scott Wood , Qinying Xu , Janine Thomas , Euan Walpole , G Tao Mai , Stephen P Ackland , Jarad Martin , Matthew Burge , Robert Finch , Christos S Karapetis , Jenny Shannon , Louise Nott , Robert Bohmer , Kate Wilson , Elizabeth Barnes , John R Zalcberg , B Mark Smithers , John Simes , Timothy Price , Val Gebski , Katia Nones , David I Watson , John V Pearson , Andrew P Barbour , Nicola Waddell

Discrepancies in tumor mutation burden reporting from sequential endobronchial ultrasound transbronchial needle aspiration samples within single lymph node stations - brief report.

Frontiers in oncology

Avec: David Fielding , Andrew J Dalley , Mahendra Singh , Lakshmy Nandakumar , Vanessa Lakis , Haarika Chittoory , David Fairbairn , Ann-Marie Patch , Stephen H Kazakoff , Kaltin Ferguson , Farzad Bashirzadeh , Michael Bint , Carl Pahoff , Jung Hwa Son , Kimberley Ryan , Alan Hodgson , Sowmya Sharma , John V Pearson , Nicola Waddell , Sunil R Lakhani , Gunter Hartel , Peter T Simpson , Katia Nones

Whole-genome sequencing reveals clinically relevant insights into the aetiology of familial breast cancers.

Annals of oncology : official journal of the European Society for Medical Oncology

Avec: K Nones , J Johnson , F Newell , A M Patch , H Thorne , S H Kazakoff , X M de Luca , M T Parsons , K Ferguson , L E Reid , A E McCart Reed , S Srihari , V Lakis , A L Davidson , P Mukhopadhyay , O Holmes , Q Xu , S Wood , C Leonard , Auteur inconnu , Auteur inconnu , Auteur inconnu , J Beesley , J M Harris , D Barnes , A Degasperi , M A Ragan , A B Spurdle , K K Khanna , S R Lakhani , J V Pearson , S Nik-Zainal , G Chenevix-Trench , N Waddell , P T Simpson

Annals of the rheumatic diseases

Avec: Rabia Moentadj , Yiwen Wang , Kate Bowerman , Linda Rehaume , Hendrik Nel , Paraic O Cuiv , Juliette Stephens , Amalina Baharom , Muralidhara Maradana , Vanessa Lakis , Mark Morrison , Timothy Wells , Philip Hugenholtz , Helen Benham , Kim-Anh Le Cao , Ranjeny Thomas

Prospective Optimization of Endobronchial Ultrasound-Guided Transbronchial Needle Aspiration Lymph Node Assessment for Lung Cancer: Three Needle Agitations Are Noninferior to 10 Agitations for Adequate Tumor Cell and DNA Yield.

JTO clinical and research reports

Avec: David Fielding , Andrew J Dalley , Mahendra Singh , Lakshmy Nandakumar , Katia Nones , Vanessa Lakis , Haarika Chittoory , Kaltin Ferguson , Farzad Bashirzadeh , Michael Bint , Carl Pahoff , Jung Hwa Son , Alan Hodgson , Sowmya Sharma , David Godbolt , Kylie Coleman , Lenore Whitfield , Nicola Waddell , Sunil R Lakhani , Gunter Hartel , Peter T Simpson

The clinical utility and costs of whole-genome sequencing to detect cancer susceptibility variants-a multi-site prospective cohort study.

Genome medicine

Avec: Aimee L Davidson , Uwe Dressel , Sarah Norris , Daffodil M Canson , Dylan M Glubb , Cristina Fortuno , Georgina E Hollway , Michael T Parsons , Miranda E Vidgen , Oliver Holmes , Lambros T Koufariotis , Vanessa Lakis , Conrad Leonard , Scott Wood , Qinying Xu , Amy E McCart Reed , Hilda A Pickett , Mohammad K Al-Shinnag , Rachel L Austin , Jo Burke , Elisa J Cops , Cassandra B Nichols , Annabel Goodwin , Marion T Harris , Megan J Higgins , Emilia L Ip , Catherine Kiraly-Borri , Chiyan Lau , Julia L Mansour , Michael W Millward , Melissa J Monnik , Nicholas S Pachter , Abiramy Ragunathan , Rachel D Susman , Sharron L Townshend , Alison H Trainer , Simon L Troth , Katherine M Tucker , Mathew J Wallis , Maie Walsh , Rachel A Williams , Ingrid M Winship , Felicity Newell , Emma Tudini , John V Pearson , Nicola K Poplawski , Helen G Mar Fan , Paul A James , Amanda B Spurdle , Nicola Waddell , Robyn L Ward

Evaluation of Endobronchial Ultrasound-Guided Transbronchial Needle Aspiration (EBUS-TBNA) Samples from Advanced Non-Small Cell Lung Cancer for Whole Genome, Whole Exome and Comprehensive Panel Sequencing.

Cancers

Avec: David Fielding , Vanessa Lakis , Andrew J Dalley , Haarika Chittoory , Felicity Newell , Lambros T Koufariotis , Ann-Marie Patch , Stephen Kazakoff , Farzad Bashirzadeh , Jung Hwa Son , Kimberley Ryan , Daniel Steinfort , Jonathan P Williamson , Michael Bint , Carl Pahoff , Phan Tien Nguyen , Scott Twaddell , David Arnold , Christopher Grainge , Andrew Pattison , David Fairbairn , Shailendra Gune , Jemma Christie , Oliver Holmes , Conrad Leonard , Scott Wood , John V Pearson , Sunil R Lakhani , Nicola Waddell , Peter T Simpson , Katia Nones

Réseau de co-auteurs

Vanessa Lakis 14 collaborations

Nicola Waddell 13 collaborations

Katia Nones 12 collaborations

John V Pearson 11 collaborations

Felicity Newell 9 collaborations

Lambros T Koufariotis 9 collaborations

Conrad Leonard 8 collaborations

Scott Wood 8 collaborations

Ann-Marie Patch 7 collaborations

Stephen H Kazakoff 7 collaborations

None None 5 collaborations

Oliver Holmes 5 collaborations

Andrew J Dalley 5 collaborations

Haarika Chittoory 5 collaborations

Farzad Bashirzadeh 5 collaborations

Michael Bint 5 collaborations

Carl Pahoff 5 collaborations

Jung Hwa Son 5 collaborations

Sunil R Lakhani 5 collaborations

Peter T Simpson 5 collaborations

Venkateswar Addala 4 collaborations

Qinying Xu 4 collaborations

David Fielding 4 collaborations

Mahendra Singh 4 collaborations

Lakshmy Nandakumar 4 collaborations

David Fairbairn 4 collaborations

Kaltin Ferguson 4 collaborations

Alan Hodgson 4 collaborations

Gunter Hartel 4 collaborations

Sowmya Sharma 4 collaborations

James S Wilmott 3 collaborations

Peter A Johansson 3 collaborations

Pamela Mukhopadhyay 3 collaborations

Robyn P M Saw 3 collaborations

Andrew J Spillane 3 collaborations

Peter M Ferguson 3 collaborations

John F Thompson 3 collaborations

Georgina V Long 3 collaborations

Graham J Mann 3 collaborations

Richard A Scolyer 3 collaborations

Nicholas K Hayward 3 collaborations

Olga Kondrashova 3 collaborations

Aimee L Davidson 3 collaborations

Rebecca L Johnston 2 collaborations

Sean M Grimmond 2 collaborations

K Nones 2 collaborations

F Newell 2 collaborations

O Holmes 2 collaborations

C Leonard 2 collaborations

S Wood 2 collaborations

Q Xu 2 collaborations

P Mukhopadhyay 2 collaborations

P T Simpson 2 collaborations

J V Pearson 2 collaborations

N Waddell 2 collaborations

Natasa Broit 2 collaborations

Jonathan R Stretch 2 collaborations

Robert V Rawson 2 collaborations

William A Robinson 2 collaborations

Vanessa F Bonazzi 2 collaborations

Priya Ramarao-Milne 2 collaborations

Kerwin F Shannon 2 collaborations

Marjan M Naeini 2 collaborations

Andrew P Barbour 2 collaborations

Kimberley Ryan 2 collaborations

Rita T Lawlor 1 collaboration

Andrea Mafficini 1 collaboration

Anguraj Sadanandam 1 collaboration

Borislav Rusev 1 collaboration

Vincenzo Corbo 1 collaboration

Claudio Luchini 1 collaboration

Sara Cingarlini 1 collaboration

Luca Landoni 1 collaboration

Roberto Salvia 1 collaboration

Michele Milella 1 collaboration

David Chang 1 collaboration

Peter Bailey 1 collaboration

Nigel B Jamieson 1 collaboration

Fraser Duthie 1 collaboration

Marie-Claude Gingras 1 collaboration

Donna M Muzny 1 collaboration

David A Wheeler 1 collaboration

Richard A Gibbs 1 collaboration

Massimo Milione 1 collaboration

Paolo Pederzoli 1 collaboration

Jaswinder S Samra 1 collaboration

Anthony J Gill 1 collaboration

Amber L Johns 1 collaboration

Andrew V Biankin 1 collaboration

Aldo Scarpa 1 collaboration

P Ramarao-Milne 1 collaboration

O Kondrashova 1 collaboration

A-M Patch 1 collaboration

L T Koufariotis 1 collaboration

V Addala 1 collaboration

M M Naeini 1 collaboration

D Steinfort 1 collaboration

J P Williamson 1 collaboration

M Bint 1 collaboration

C Pahoff 1 collaboration

P T Nguyen 1 collaboration

S Twaddell 1 collaboration

D Arnold 1 collaboration

C Grainge 1 collaboration

F Basirzadeh 1 collaboration

D Fielding 1 collaboration

A J Dalley 1 collaboration

H Chittoory 1 collaboration

L G Aoude 1 collaboration

V F Bonazzi 1 collaboration

K Patel 1 collaboration

A P Barbour 1 collaboration

D A Fennell 1 collaboration

B W Robinson 1 collaboration

J Creaney 1 collaboration

G Hollway 1 collaboration

Carol M Amato 1 collaboration

Robert Van Gulick 1 collaboration

Karl Lewis 1 collaboration

Theresa Medina 1 collaboration

Rene Gonzalez 1 collaboration

Tristan J Dodds 1 collaboration

Mitchell P Levesque 1 collaboration

Deborah Smith 1 collaboration

Asmerom T Sengal 1 collaboration

Robert Ju 1 collaboration

Leisl M Packer 1 collaboration

Rebecca Rogers 1 collaboration

Claire Davies 1 collaboration

James Nicklin 1 collaboration

Andrea Garrett 1 collaboration

Naven Chetty 1 collaboration

Lewis Perrin 1 collaboration

Pamela M Pollock 1 collaboration

Ines Pires da Silva 1 collaboration

Alexander M Menzies 1 collaboration

Matteo S Carlino 1 collaboration

Helen Rizos 1 collaboration

Jarem J Edwards 1 collaboration

Christian U Blank 1 collaboration

Jenette Creaney 1 collaboration

Sophie A Sneddon 1 collaboration

Ian M Dick 1 collaboration

Y C Gary Lee 1 collaboration

Ebony J Rouse 1 collaboration

Apostolos Nakas 1 collaboration

David Waller 1 collaboration

Annabel Sharkey 1 collaboration

Raphael Bueno 1 collaboration

Dean A Fennell 1 collaboration

Bruce W Robinson 1 collaboration

Antonia L Pritchard 1 collaboration

Serigne N Lo 1 collaboration

Andrew J Colebatch 1 collaboration

Matthew H Law 1 collaboration

Kelly M Brooks 1 collaboration

Jane M Palmer 1 collaboration

Kasey L Couts 1 collaboration

Ismael A Vergara 1 collaboration

Omgo E Nieweg 1 collaboration

Brindha Shivalingam 1 collaboration

David I Fielding 1 collaboration

Lauren G Aoude 1 collaboration

Kalpana Patel 1 collaboration

Guy Lampe 1 collaboration

Sandra Brosda 1 collaboration

Janine Thomas 1 collaboration

Euan Walpole 1 collaboration

G Tao Mai 1 collaboration

Stephen P Ackland 1 collaboration

Jarad Martin 1 collaboration

Matthew Burge 1 collaboration

Robert Finch 1 collaboration

Christos S Karapetis 1 collaboration

Jenny Shannon 1 collaboration

Louise Nott 1 collaboration

Robert Bohmer 1 collaboration

Kate Wilson 1 collaboration

Elizabeth Barnes 1 collaboration

John R Zalcberg 1 collaboration

B Mark Smithers 1 collaboration

John Simes 1 collaboration

Timothy Price 1 collaboration

Val Gebski 1 collaboration

David I Watson 1 collaboration

J Johnson 1 collaboration

A M Patch 1 collaboration

H Thorne 1 collaboration

S H Kazakoff 1 collaboration

X M de Luca 1 collaboration

M T Parsons 1 collaboration

K Ferguson 1 collaboration

L E Reid 1 collaboration

A E McCart Reed 1 collaboration

S Srihari 1 collaboration

A L Davidson 1 collaboration

J Beesley 1 collaboration

J M Harris 1 collaboration

D Barnes 1 collaboration

A Degasperi 1 collaboration

M A Ragan 1 collaboration

A B Spurdle 1 collaboration

K K Khanna 1 collaboration

S R Lakhani 1 collaboration

S Nik-Zainal 1 collaboration

G Chenevix-Trench 1 collaboration

Rabia Moentadj 1 collaboration

Yiwen Wang 1 collaboration

Kate Bowerman 1 collaboration

Linda Rehaume 1 collaboration

Hendrik Nel 1 collaboration

Paraic O Cuiv 1 collaboration

Juliette Stephens 1 collaboration

Amalina Baharom 1 collaboration

Muralidhara Maradana 1 collaboration

Mark Morrison 1 collaboration

Timothy Wells 1 collaboration

Philip Hugenholtz 1 collaboration

Helen Benham 1 collaboration

Kim-Anh Le Cao 1 collaboration

Ranjeny Thomas 1 collaboration

David Godbolt 1 collaboration

Kylie Coleman 1 collaboration

Lenore Whitfield 1 collaboration

Uwe Dressel 1 collaboration

Sarah Norris 1 collaboration

Daffodil M Canson 1 collaboration

Dylan M Glubb 1 collaboration

Cristina Fortuno 1 collaboration

Georgina E Hollway 1 collaboration

Michael T Parsons 1 collaboration

Miranda E Vidgen 1 collaboration

Amy E McCart Reed 1 collaboration

Hilda A Pickett 1 collaboration

Mohammad K Al-Shinnag 1 collaboration

Rachel L Austin 1 collaboration

Jo Burke 1 collaboration

Elisa J Cops 1 collaboration

Cassandra B Nichols 1 collaboration

Annabel Goodwin 1 collaboration

Marion T Harris 1 collaboration

Megan J Higgins 1 collaboration

Emilia L Ip 1 collaboration

Catherine Kiraly-Borri 1 collaboration

Chiyan Lau 1 collaboration

Julia L Mansour 1 collaboration

Michael W Millward 1 collaboration

Melissa J Monnik 1 collaboration

Nicholas S Pachter 1 collaboration

Abiramy Ragunathan 1 collaboration

Rachel D Susman 1 collaboration

Sharron L Townshend 1 collaboration

Alison H Trainer 1 collaboration

Simon L Troth 1 collaboration

Katherine M Tucker 1 collaboration

Mathew J Wallis 1 collaboration

Maie Walsh 1 collaboration

Rachel A Williams 1 collaboration

Ingrid M Winship 1 collaboration

Emma Tudini 1 collaboration

Nicola K Poplawski 1 collaboration

Helen G Mar Fan 1 collaboration

Paul A James 1 collaboration

Amanda B Spurdle 1 collaboration

Robyn L Ward 1 collaboration

Stephen Kazakoff 1 collaboration

Daniel Steinfort 1 collaboration

Jonathan P Williamson 1 collaboration

Phan Tien Nguyen 1 collaboration

Scott Twaddell 1 collaboration

David Arnold 1 collaboration

Christopher Grainge 1 collaboration

Andrew Pattison 1 collaboration

Shailendra Gune 1 collaboration

Jemma Christie 1 collaboration