Characterization and complete genomic analysis of two Salmonella phages, SenALZ1 and SenASZ3, new members of the genus Cba120virus.
Base Composition
/ genetics
Base Sequence
Caudovirales
/ classification
DNA, Viral
/ genetics
Genome, Viral
/ genetics
Microscopy, Electron, Transmission
Open Reading Frames
/ genetics
Phylogeny
Rivers
/ virology
Salmonella Phages
/ classification
Salmonella enterica
/ virology
Sequence Analysis, DNA
Journal
Archives of virology
ISSN: 1432-8798
Titre abrégé: Arch Virol
Pays: Austria
ID NLM: 7506870
Informations de publication
Date de publication:
May 2019
May 2019
Historique:
received:
15
08
2018
accepted:
23
01
2019
pubmed:
10
3
2019
medline:
6
5
2019
entrez:
10
3
2019
Statut:
ppublish
Résumé
Salmonella phages SenALZ1 and SenASZ3, two novel phages infecting Salmonella enterica, were isolated and analyzed. The genomes of these two phages consist of 154,811 and 157,630 base pairs (bp), with G+C contents of 44.56% and 44.74%, respectively. Fifty-nine of 199 open reading frames (ORFs) in the SenALZ1 genome, and 60 of the 204 in the SenASZ3 genome show similarity to reference sequences in the NCBI nr database that encode putative phage proteins with predicted functions. Based on the results of transmission electron microscopy (TEM) examination, complete genome sequence alignment, phylogenetic analysis, and gene annotation, we propose that these two phages are representative isolates of two new species of the genus Cba120virus, subfamily Cvivirinae, family Ackermannviridae.
Identifiants
pubmed: 30850860
doi: 10.1007/s00705-019-04183-3
pii: 10.1007/s00705-019-04183-3
doi:
Substances chimiques
DNA, Viral
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1475-1478Subventions
Organisme : Shenzhen Science and Technology Innovation Commission
ID : JCYJ20160229201759414
Organisme : Shenzhen Science and Technology Innovation Commission
ID : JCYJ20170413153329565
Organisme : Shenzhen Science and Technology Innovation Commission
ID : KQTD2015033117210153
Organisme : Shenzhen Science and Technology Innovation Commission
ID : KQTD2016112915000294
Organisme : National Natural Science Foundation of China (CN)
ID : 31570115
Organisme : National Natural Science Foundation of China (CN)
ID : 31570095
Organisme : National Natural Science Foundation of China (CN)
ID : 31500104
Organisme : National Natural Science Foundation of China (CN)
ID : 11504399
Organisme : Shenzhen development and reform commission
ID : No. [2016]1194