Genomes of the wild beets Beta patula and Beta vulgaris ssp. maritima.
Beta patula
Beta vulgaris ssp. maritima
Beta vulgaris ssp. vulgaris
comparative genomics
gene annotation
genome assembly
genome sequencing
genome structure and evolution
sugar beet
synteny display
Journal
The Plant journal : for cell and molecular biology
ISSN: 1365-313X
Titre abrégé: Plant J
Pays: England
ID NLM: 9207397
Informations de publication
Date de publication:
09 2019
09 2019
Historique:
received:
01
03
2019
revised:
23
04
2019
accepted:
02
05
2019
pubmed:
20
5
2019
medline:
2
7
2020
entrez:
20
5
2019
Statut:
ppublish
Résumé
We present draft genome assemblies of Beta patula, a critically endangered wild beet endemic to the Madeira archipelago, and of the closely related Beta vulgaris ssp. maritima (sea beet). Evidence-based reference gene sets for B. patula and sea beet were generated, consisting of 25 127 and 27 662 genes, respectively. The genomes and gene sets of the two wild beets were compared with their cultivated sister taxon B. vulgaris ssp. vulgaris (sugar beet). Large syntenic regions were identified, and a display tool for automatic genome-wide synteny image generation was developed. Phylogenetic analysis based on 9861 genes showing 1:1:1 orthology supported the close relationship of B. patula to sea beet and sugar beet. A comparative analysis of the Rz2 locus, responsible for rhizomania resistance, suggested that the sequenced B. patula accession was rhizomania susceptible. Reference karyotypes for the two wild beets were established, and genomic rearrangements were detected. We consider our data as highly valuable and comprehensive resources for wild beet studies, B. patula conservation management, and sugar beet breeding research.
Identifiants
pubmed: 31104348
doi: 10.1111/tpj.14413
pmc: PMC9546096
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1242-1253Informations de copyright
© 2019 The Authors. The Plant Journal published by Society for Experimental Biology and John Wiley & Sons Ltd.
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