Congruent population genetic structures and divergence histories in anther-smut fungi and their host plants Silene italica and the Silene nutans species complex.
Basidiomycota
/ genetics
Biological Coevolution
Cell Nucleus
/ genetics
DNA, Chloroplast
/ genetics
Europe
Flowers
/ microbiology
Gene Flow
Genetic Markers
Genetics, Population
Genome, Fungal
Genome, Plant
Genotype
Microsatellite Repeats
Phylogeography
Plant Diseases
/ microbiology
Polymorphism, Single Nucleotide
Silene
/ classification
approximate Bayesian computation
co-evolution
cryptic speciation
genetic divergence
host-pathogen interaction
population genetic structure
Journal
Molecular ecology
ISSN: 1365-294X
Titre abrégé: Mol Ecol
Pays: England
ID NLM: 9214478
Informations de publication
Date de publication:
03 2020
03 2020
Historique:
received:
26
10
2019
revised:
07
02
2020
accepted:
10
02
2020
pubmed:
19
2
2020
medline:
2
3
2021
entrez:
19
2
2020
Statut:
ppublish
Résumé
Study of the congruence of population genetic structure between hosts and pathogens gives important insights into their shared phylogeographical and coevolutionary histories. We studied the population genetic structure of castrating anther-smut fungi (genus Microbotryum) and of their host plants, the Silene nutans species complex, and the morphologically and genetically closely related Silene italica, which can be found in sympatry. Phylogeographical population genetic structure related to persistence in separate glacial refugia has been recently revealed in the S. nutans plant species complex across Western Europe, identifying several distinct lineages. We genotyped 171 associated plant-pathogen pairs of anther-smut fungi and their host plant individuals using microsatellite markers and plant chloroplastic single nucleotide polymorphisms. We found clear differentiation between fungal populations parasitizing S. nutans and S. italica plants. The population genetic structure of fungal strains parasitizing the S. nutans plant species complex mirrored the host plant genetic structure, suggesting that the pathogen was isolated in glacial refugia together with its host and/or that it has specialized on the plant genetic lineages. Using random forest approximate Bayesian computation (ABC-RF), we found that the divergence history of the fungal lineages on S. nutans was congruent with that previously inferred for the host plant and probably occurred with ancient but no recent gene flow. Genome sequences confirmed the genetic structure and the absence of recent gene flow between fungal genetic lineages. Our analyses of individual host-pathogen pairs contribute to a better understanding of co-evolutionary histories between hosts and pathogens in natural ecosystems, in which such studies remain scarce.
Substances chimiques
DNA, Chloroplast
0
Genetic Markers
0
Banques de données
SRA
['PRJNA589725']
Dryad
['10.5061/dryad.m63xsj3z3']
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
1154-1172Informations de copyright
© 2020 John Wiley & Sons Ltd.
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