Transcriptome Analysis of Carbohydrate Metabolism Genes and Molecular Regulation of Sucrose Transport Gene
Amino Acid Sequence
Carbohydrate Metabolism
/ genetics
Computational Biology
/ methods
Flowers
/ genetics
Gene Expression Profiling
/ methods
Gene Expression Regulation, Plant
Gene Regulatory Networks
High-Throughput Nucleotide Sequencing
Lilium
/ genetics
Membrane Transport Proteins
/ chemistry
Metabolic Networks and Pathways
Models, Molecular
Molecular Sequence Annotation
Phenotype
Plant Development
/ genetics
Plant Proteins
/ chemistry
Protein Conformation
Structure-Activity Relationship
Transcriptome
Oriental hybrid lily
SUT
bulb development
flower bud differentiation
vernalization
Journal
International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791
Informations de publication
Date de publication:
27 Apr 2020
27 Apr 2020
Historique:
received:
26
03
2020
revised:
23
04
2020
accepted:
24
04
2020
entrez:
1
5
2020
pubmed:
1
5
2020
medline:
2
2
2021
Statut:
epublish
Résumé
The quality of Lily cut flower was determined by the quality of bulbs. During the process of vernalization and flower bud differentiation, sugar massively accumulated in the bulb, which influenced the bulb development. However, the details of sugar genes' regulation mechanism for these processes were not fully understood. Here, morphological physiology, transcriptomes and gene engineering technology were used to explore this physiological change. Seventy-two genes of 25 kinds of sugar metabolism-related genes were annotated after re-analyzing transcriptome data of Oriental hybrid lily 'Sorbonne' bulbs, which were generated on Hiseq Illumina 2000. The results showed that these genes were closely related to lily bulb vernalization and development. Combining gene expression pattern with gene co-expression network, five genes (Contig5669, Contig13319, Contig7715, Contig1420 and Contig87292) were considered to be the most potential signals, and the sucrose transporter gene (
Identifiants
pubmed: 32349427
pii: ijms21093092
doi: 10.3390/ijms21093092
pmc: PMC7247698
pii:
doi:
Substances chimiques
Membrane Transport Proteins
0
Plant Proteins
0
sucrose transport protein, plant
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : the China National Natural Science Foundation (grant number 31672190,
ID : (grant number 31672190,
Références
FEMS Yeast Res. 2002 May;2(2):93-102
pubmed: 12702297
Curr Opin Plant Biol. 2010 Jun;13(3):274-9
pubmed: 20056477
J Exp Bot. 2015 Aug;66(16):5067-82
pubmed: 25873685
Planta. 2018 Mar;247(3):587-611
pubmed: 29138971
Front Plant Sci. 2013 Feb 20;4:26
pubmed: 23429841
Plant J. 2019 Jan;97(2):321-340
pubmed: 30288818
Plant Physiol. 2011 Jan;155(1):64-9
pubmed: 20971857
J Exp Bot. 2004 Jan;55(395):253-64
pubmed: 14673024
Front Plant Sci. 2014 Mar 26;5:113
pubmed: 24723932
PLoS One. 2016 Jan 21;11(1):e0147418
pubmed: 26796516
Plant Mol Biol. 2008 May;67(1-2):151-67
pubmed: 18278579
Plant Physiol. 2001 Sep;127(1):252-61
pubmed: 11553753
Mol Biol Rep. 2014 Dec;41(12):8231-45
pubmed: 25200436
J Integr Plant Biol. 2017 Jun;59(6):390-408
pubmed: 28206710
Physiol Plant. 2015 Jun;154(2):179-93
pubmed: 25348206
Plant Cell Physiol. 2015 Sep;56(9):1721-37
pubmed: 26079674
EMBO J. 1992 Dec;11(13):4705-13
pubmed: 1464305
Plant Physiol. 2008 Feb;146(2):515-28
pubmed: 18083796
Curr Opin Plant Biol. 2010 Jun;13(3):288-98
pubmed: 20303321
BMC Plant Biol. 2010 Dec 09;10:271
pubmed: 21143910
New Phytol. 2013 Apr;198(2):453-65
pubmed: 23425297
Plant Cell Physiol. 2014 Jun;55(6):1123-41
pubmed: 24833026
Front Plant Sci. 2013 Jul 24;4:272
pubmed: 23898339
Plant Physiol. 2007 Jan;143(1):188-98
pubmed: 17098854
Annu Rev Biochem. 2015;84:865-94
pubmed: 25747398
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
Plant Physiol Biochem. 2013 Dec;73:63-9
pubmed: 24056128
Mol Plant. 2011 May;4(3):395-406
pubmed: 21502662
Trends Biochem Sci. 2013 Mar;38(3):151-9
pubmed: 23403214
Mol Plant. 2010 Nov;3(6):942-55
pubmed: 20729475
Plant Sci. 2012 Jun;188-189:97-101
pubmed: 22525249
Plant Physiol. 2017 Aug;174(4):2348-2362
pubmed: 28600345
Mol Biol Rep. 2014 Oct;41(10):6619-34
pubmed: 24990697
BMC Plant Biol. 2014 Dec 19;14:358
pubmed: 25524032
Plant Physiol. 2015 Jun;168(2):635-47
pubmed: 25888616
Plant Cell Environ. 2019 Mar;42(3):918-930
pubmed: 29791976
J Mol Biol. 1990 Oct 5;215(3):403-10
pubmed: 2231712
Plant Cell. 2000 Aug;12(8):1345-55
pubmed: 10948254