Yeast population dynamics on air exposure in total mixed ration silage with sweet potato residue.
TMR silage
aerobic deterioration
fermentation
high-throughput sequencing
yeast population
Journal
Animal science journal = Nihon chikusan Gakkaiho
ISSN: 1740-0929
Titre abrégé: Anim Sci J
Pays: Australia
ID NLM: 100956805
Informations de publication
Date de publication:
Historique:
received:
11
03
2019
revised:
26
08
2019
accepted:
01
04
2020
entrez:
3
6
2020
pubmed:
3
6
2020
medline:
2
10
2020
Statut:
ppublish
Résumé
To investigate the yeast population dynamics during air exposure in total mixed ration (TMR) silage containing sweet potato residue. TMR were ensiled in laboratory silos (1 kg) with or without two lactic acid bacteria strains, Lactobacillus plantarum (LP), and Lactobacillus amylovorus (LA). Fermentation characteristics were measured and yeast population was investigated by ITS1 region gene sequencing using Illumina MiSeq platform. All treatments were well ensiled, and L. amylovorus improved aerobic stability. During aerobic exposure, Pichia kudriavzevii was detected with increased relative abundance in all treatments and more relative abundant in LP. Pichia fermentans was more relative abundant in control. Higher relative abundance of Pichia anomala was detected in deteriorating LP. The relative abundance of Pichia ohmeri increased during later aerobic exposure in the control and LA, with a significant increase in the count of yeast population. Despite Cryptococcus was detected more relative abundant during early stage of aerobic exposure, the yeast population was below the detection limit. Aerobic deterioration was characterized by an increase in operational taxonomic units of Pichia. High relative abundance of P. anomala and P. kudriavzevii made aerobic deterioration easier. Inhibition of P. fermentans might be an effective strategy for improving the aerobic stability to some instance.
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
e13397Subventions
Organisme : National Key R&D Program of China
ID : 2017YFD0502102
Pays : International
Organisme : International Cooperation Project
ID : 2015DFG32360
Pays : International
Informations de copyright
© 2020 Japanese Society of Animal Science.
Références
Beck, T., & Gross, F. (1964). Ursachen der unterschiedlichen Haltbarkeit von Gärfutter. Wirtschaftseigene Futter, 10, 298-312.
Carvalho, B., Ávila, C., Bernardes, T., Pereira, M., Santos, C., & Schwan, R. (2017). Fermentation profile and identification of lactic acid bacteria and yeasts of rehydrated corn kernel silage. Journal of Applied Microbiology, 122, 589-600. https://doi.org/10.1111/jam.13371
Coda, R., Rizzello, C. G., Di Cagno, R., Trani, A., Cardinali, G., & Gobbetti, M. (2013). Antifungal activity of Meyerozyma guilliermondii: Identification of active compounds synthesized during dough fermentation and their effect on long-term storage of wheat bread. Food Microbiology, 33, 243-251. https://doi.org/10.1016/j.fm.2012.09.023
Dolci, P., Tabacco, E., Cocolin, L., & Borreani, G. (2011). Microbial dynamics during aerobic exposure of corn silage stored under oxygen barrier or polyethylene films. Applied and Environmental Microbiology, AEM., 05050-05011, https://doi.org/10.1128/AEM.05050-11
Duniere, L., Xu, S., Long, J., Elekwachi, C., Wang, Y., Turkington, K., … McAllister, T. A. (2017). Bacterial and fungal core microbiomes associated with small grain silages during ensiling and aerobic spoilage. Bmc Microbiology, 17, https://doi.org/10.1186/s12866-017-0947-0
Eikmeyer, F. G., Köfinger, P., Poschenel, A., Jünemann, S., Zakrzewski, M., Heinl, S., … Schlüter, A. (2013). Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass ensiling. Journal of Biotechnology, 167, 334-343. https://doi.org/10.1016/j.jbiotec.2013.07.021
Fitzsimons, A., & O'Connell, M. (1994). Comparative analysis of amylolytic lactobacilli and Lactobacillus plantarum as potential silage inoculants. FEMS Microbiology Letters, 116, 137-145. https://doi.org/10.1111/j.1574-6968.1994.tb06692.x
Glewen, M., Kung, L., Shaver, R., & Hoffman, P. (2013). Dealing with high yeast levels in high moisture corn and corn silage. Retrieved from http://refhub.elsevier.com/S0261-2194(17)30195-3/sref8
Guo, X. S., Ke, W. C., Ding, W. R., Ding, L. M., Xu, D. M., Wang, W. W., … Yang, F. Y. (2018). Profiling of metabolome and bacterial community dynamics in ensiled Medicago sativa inoculated without or with Lactobacillus plantarum or Lactobacillus buchneri. Scientific Reports, 8, 357. https://doi.org/10.1038/s41598-017-18348-0
Hamm, A. C., Tenuta, M., Krause, D. O., Ominski, K. H., Tkachuk, V. L., & Flaten, D. N. (2016). Bacterial communities of an agricultural soil amended with solid pig and dairy manures, and urea fertilizer. Applied Soil Ecology, 103, 61-71. https://doi.org/10.1016/j.apsoil.2016.02.015
Hao, W., Wang, H. L., Ning, T. T., Yang, F. Y., & Xu, C. C. (2015). Aerobic stability and effects of yeasts during deterioration of non-fermented and fermented total mixed ration with different moisture levels. Asian-Australasian Journal of Animal Sciences, 28, 816-826. https://doi.org/10.5713/ajas.14.0837
Hu, X., Hao, W., Wang, H., Ning, T., Zheng, M., & Xu, C. (2015). Fermentation characteristics and lactic acid bacteria succession of total mixed ration silages formulated with peach pomace. Asian-Australasian Journal of Animal Sciences, 28, 502-510. https://doi.org/10.5713/ajas.14.0508
Kalathenos, P., Baranyi, J., Sutherland, J. P., & Roberts, T. A. (1995). A response surface study on the role of some environmental factors affecting the growth of Saccharomyces cerevisiae. International Journal of Food Microbiology, 25, 63-74. https://doi.org/10.1016/0168-1605(94)00085-K
Li, L., Sun, Y., Yuan, Z., Kong, X., Wao, Y., Yang, L., … Li, D. (2015). Effect of microalgae supplementation on the silage quality and anaerobic digestion performance of Manyflower silvergrass. Bioresource Technology, 189, 334-340. https://doi.org/10.1016/j.biortech.2015.04.029
Li, Y., & Nishino, N. (2011). Effects of inoculation of Lactobacillus rhamnosus and Lactobacillus buchneri on fermentation, aerobic stability and microbial communities in whole crop corn silage. Grassland Science, 57, 184-191. https://doi.org/10.1111/j.1744-697x.2011.00226.x
McAllister, T., Duniere, L., Drouin, P., Xu, S., Wang, Y., Munns, K., & Zaheer, R. (2018). Silage review: Using molecular approaches to define the microbial ecology of silage. Journal of Dairy Science, 101, 4060-4074. https://doi.org/10.3168/jds.2017-13704
McGuire, K. L., Payne, S. G., Palmer, M. I., Gillikin, C. M., Keefe, D., Kim, S. J., … Fierer, N. (2013). Digging the New York City skyline: Soil fungal communities in green roofs and city parks. PLoS One, 8, e58020. https://doi.org/10.1371/journal.pone.0058020
Nakamura, L. (1981). Lactobacillus amylovorus, a new starch-hydrolyzing species from cattle waste-corn fermentations. International Journal of Systematic and Evolutionary Microbiology, 31, 56-63. https://doi.org/10.1016/j.fm.2012.09.023
Neher, D. A., Weicht, T. R., Bates, S. T., Leff, J. W., & Fierer, N. (2013). Changes in bacterial and fungal communities across compost recipes, preparation methods, and composting times. PLoS One, 8, e79512. https://doi.org/10.1371/journal.pone.0079512
O'Brien, M., O'Kiely, P., Forristal, P. D., & Fuller, H. T. (2007). Visible fungal growth on baled grass silage during the winter feeding season in Ireland and silage characteristics associated with the occurrence of fungi. Animal Feed Science and Technology, 139, 234-256. https://doi.org/10.1016/j.anifeedsci.2007.01.010
Pahlow, G., Muck, R. E., Driehuis, F., Elferink, S., & Spoelstra, S. F. (2003). Microbiology of ensiling. Agronomy, 42, 31-94. https://doi.org/10.2134/agronmonogr42.c2
Passoth, V., Fredlund, E., Druvefors, U. Ä., & Schnürer, J. (2006). Biotechnology, physiology and genetics of the yeast Pichia anomala. FEMS Yeast Research, 6, 3-13. https://doi.org/10.1111/j.1567-1364.2005.00004.x
Rosenfeld, E., & Beauvoit, B. (2003). Role of the non-respiratory pathways in the utilization of molecular oxygen by Saccharomyces cerevisiae. Yeast, 20, 1115-1144. https://doi.org/10.1002/yea.1026
Rossi, F., & Dellaglio, F. (2007). Quality of silages from Italian farms as attested by number and identity of microbial indicators. Journal of Applied Microbiology, 103, 1707-1715. https://doi.org/10.1111/j.1365-2672.2007.03416.x
Ryan, L. A., Zannini, E., Dal Bello, F., Pawlowska, A., Koehler, P., & Arendt, E. K. (2011). Lactobacillus amylovorus DSM 19280 as a novel food-grade antifungal agent for bakery products. International Journal of Food Microbiology, 146, 276-283. https://doi.org/10.1016/j.ijfoodmicro.2011.02.036
Schenck, J., & Müller, C. E. (2014). Microbial composition before and after conservation of grass-dominated haylage harvested early, middle, and late in the season. Journal of Equine Veterinary Science, 34, 593-601. https://doi.org/10.1016/j.jevs.2013.11.005
Tennant, R., Sambles, C., Diffey, G., Moore, K., & Love, J. (2017). Metagenomic analysis of silage. Journal of Visualized Experiments, 119, e54936. https://doi.org/10.3791/54936
Valan Arasu, M., Jung, M. W., Ilavenil, S., Jane, M., Kim, D. H., Lee, K. D., … Lim, Y. C. (2013). Isolation and characterization of antifungal compound from Lactobacillus plantarum KCC-10 from forage silage with potential beneficial properties. Journal of Applied Microbiology, 115, 1172-1185. https://doi.org/10.1111/jam.12319
Vu, V. H., Li, X., Wang, M., Liu, R., Zhang, G., Liu, W., … Sun, Q. (2019). Dynamics of fungal community during silage fermentation of elephant grass (Pennisetum purpureum) produced in northern Vietnam. Asian-Australasian Journal of Animal Sciences, 32, 996-1006. https://doi.org/10.5713/ajas.18.0708
Wang, H., Hao, W., Ning, T., Zheng, M., & Xu, C. (2018). Characterization of culturable yeast species associating with whole crop corn and total mixed ration silage. Asian-Australasian Journal of Animal Sciences, 31, 198-207. https://doi.org/10.5713/ajas.17.0183
Wang, H., Ning, T., Hao, W., Zheng, M., & Xu, C. (2016). Dynamics associated with prolonged ensiling and aerobic deterioration of total mixed ration silage containing whole crop corn. Asian-Australasian Journal of Animal Sciences, 29, 62-72. https://doi.org/10.5713/ajas.15.0319
Woolford, M. (1990). The detrimental effects of air on silage. Journal of Applied Bacteriology, 68, 101-116. https://doi.org/10.1111/j.1365-2672.1990.tb02554.x
Zened, A., Combes, S., Cauquil, L., Mariette, J., Klopp, C., Bouchez, O., … Enjalbert, F. (2013). Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets. FEMS Microbiology Ecology, 83, 504-514. https://doi.org/10.1111/1574-6941.12011
Zheng, M. L., Niu, D. Z., Jiang, D., Zuo, S. S., & Xu, C. C. (2017). Dynamics of microbial community during ensiling direct-cut alfalfa with and without LAB inoculant and sugar. Journal of Applied Microbiology, 122(6), 1456-1470. https://doi.org/10.1111/jam.13456
Zuo, S. S., Niu, D. Z., Ning, T. T., Zheng, M. L., Jiang, D., & Xu, C. C. (2018). Protein enrichment of sweet potato beverage residues mixed with peanut shells by Aspergillus oryzae and Bacillus subtilis using central composite design. Waste and Biomass Valorization, 9, 835-844. https://doi.org/10.1007/s12649-017-9844-x