Partitioning heterozygosity in subdivided populations: Some misuses of Nei's decomposition and an alternative probabilistic approach.
DST
conservation strategy
differentiation
gene diversity
heterozygosity partition
structured populations
Journal
Molecular ecology
ISSN: 1365-294X
Titre abrégé: Mol Ecol
Pays: England
ID NLM: 9214478
Informations de publication
Date de publication:
08 2020
08 2020
Historique:
received:
10
12
2019
accepted:
12
06
2020
revised:
12
06
2020
pubmed:
1
7
2020
medline:
22
6
2021
entrez:
29
6
2020
Statut:
ppublish
Résumé
Nei's decomposition of total expected heterozygosity in subdivided populations into within- and between-subpopulation components, H
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
2957-2962Informations de copyright
© 2020 John Wiley & Sons Ltd.
Références
Alcala, N., & Rosenberg, N. A. (2017). Mathematical constraints on FST: Biallelic markers in arbitrarily many populations. Genetics, 206, 1581-1600.
Chakraborty, R. (1974). A note on Nei's measure of gene diversity in a substructured population. Humangenetik, 21, 85-88.
Edge, M. D., & Rosenberg, N. A. (2014). Upper bounds on FST in terms of the frequency of the most frequent allele and total homozygosity: The case of a specified number of alleles. Theoretical Population Biology, 97, 20-34.
Gerlach, G., Jueterbock, A., Kraemer, P., Deppermann, J., & Harmand, P. (2010). Calculations of population differentiation based on GST and D: Forget GST but not all of statistics! Molecular Ecology, 19, 3845-3852. https://doi.org/10.1111/j.1365-294X.2010.04784.x
Gregorius, H. R. (1978). The concept of genetic diversity and its formal relationship to heterozygosity and genetic distance. Mathematical Biosciences, 41, 253-271. https://doi.org/10.1016/0025-5564(78)90040-8
Hedrick, P. W. (1999). Highly variable loci and their interpretation in evolution and conservation. Evolution, 53, 313-318.
Hedrick, P. W. (2005). A standardized genetic differentiation measure. Evolution, 59, 1633-1638. https://doi.org/10.1111/j.0014-3820.2005.tb01814.x
Holsinger, K. E., & Weir, B. S. (2009). Genetics in geographically structured populations: Defining, estimating and interpreting FST. Nature Reviews Genetics, 10, 639-650. https://doi.org/10.1038/nrg2611
Jakobsson, M., Edge, M. D., & Rosenberg, N. A. (2013). The relationship between FST and the frequency of the most frequent allele. Genetics, 193, 515-528.
Jost, L. (2007). Partitioning diversity into independent alpha and beta components. Evolution, 88, 2427-2439.
Jost, L. (2008). GST and its relatives do not measure differentiation. Molecular Ecology, 17, 4015-4026.
Nagylaki, T. (1998). Fixation indices in subdivided populations. Genetics, 148, 1325-1332.
Nei, M. (1973). Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences USA, 70(12), 3321-3323. https://doi.org/10.1073/pnas.70.12.3321
Nei, M. (1977). F-statistics and analysis of gene diversity in subdivided populations. Annals of Human Genetics, 41, 225-233. https://doi.org/10.1111/j.1469-1809.1977.tb01918.x
Nei, M., & Chesser, R. K. (1983). Estimation of fixation indices and gene diversities. Annals of Human Genetics, 47, 253-259. https://doi.org/10.1111/j.1469-1809.1983.tb00993.x
Ollivier, L., & Foulley, J. L. (2005). Aggregate diversity: New approach combining within- and between-breed genetic diversity. Livestock Production Science, 95, 247-254. https://doi.org/10.1016/j.livprodsci.2005.01.005
Petit, R. J., El Moussadik, A., & Pons, O. (1998). Identifying populations for conservation on the basis of genetic markers. Conservation Biology, 12, 844-855. https://doi.org/10.1046/j.1523-1739.1998.96489.x
Wang, J. (2012). On the measurements of genetic differentiation among populations. Genetics Research, 94, 275-289. https://doi.org/10.1017/S0016672312000481
Wang, J. (2015). Does GST underestimate genetic differentiation from marker data? Molecular Ecology, 24, 3546-3558.
Weir, B. S., & Cockerham, C. C. (1984). Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
Weitzman, M. L. (1993). What to preserve? An application of diversity theory to Crane conservation. Quarterly Journal of Economics, 108, 157-183. https://doi.org/10.2307/2118499
Whitlock, M. C. (2011). G’ST and D do not replace FST. Molecular Ecology, 20, 1083-1091. https://doi.org/10.1111/j.1365-294X.2010.04996.x