Towards yeast taxogenomics: lessons from novel species descriptions based on complete genome sequences.

Computational Biology Genome, Fungal Phylogeny Whole Genome Sequencing Yeasts / classification
Guidelines Novel species Yeast Taxonomy

Journal

FEMS yeast research
ISSN: 1567-1364
Titre abrégé: FEMS Yeast Res
Pays: England
ID NLM: 101085384

Informations de publication

Date de publication:
01 09 2020
Historique:
received: 10 01 2020
accepted: 23 07 2020
pubmed: 28 7 2020
medline: 25 9 2021
entrez: 26 7 2020
Statut: ppublish

Résumé

In recent years, 'multi-omic' sciences have affected all aspects of fundamental and applied biological research. Yeast taxonomists, though somewhat timidly, have begun to incorporate complete genomic sequences into the description of novel taxa, taking advantage of these powerful data to calculate more reliable genetic distances, construct more robust phylogenies, correlate genotype with phenotype and even reveal cryptic sexual behaviors. However, the use of genomic data in formal yeast species descriptions is far from widespread. The present review examines published examples of genome-based species descriptions of yeasts, highlights relevant bioinformatic approaches, provides recommendations for new users and discusses some of the challenges facing the genome-based systematics of yeasts.

Identifiants

DOI: 10.1093/femsyr/foaa042 PMID: 32710773
pubmed: 32710773
pii: 5876348
doi: 10.1093/femsyr/foaa042
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Review

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

© FEMS 2020.

Auteurs

D Libkind (D)

Centro de Referencia en Levaduras y Tecnología Cervecera (CRELTEC), Instituto Andino Patagónico de Tecnologías Biológicas y Geoambientales (IPATEC) - CONICET / Universidad Nacional del Comahue, Bariloche, Argentina.

N Čadež (N)

Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, 1000 Ljubljana, Slovenia.

D A Opulente (DA)

Laboratory of Genetics, Wisconsin Energy Institute, J. F. Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, University of Wisconsin-Madison, Madison, WI, USA.
DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI, USA.

Q K Langdon (QK)

Laboratory of Genetics, Wisconsin Energy Institute, J. F. Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, University of Wisconsin-Madison, Madison, WI, USA.

C A Rosa (CA)

Departamento de Microbiologia, ICB, C.P. 486, Universidade Federal de Minas Gerais, Belo Horizonte, MG, 31270-901, Brazil.

J P Sampaio (JP)

UCIBIO, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal.

P Gonçalves (P)

UCIBIO, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal.

C T Hittinger (CT)

Laboratory of Genetics, Wisconsin Energy Institute, J. F. Crow Institute for the Study of Evolution, Center for Genomic Science Innovation, University of Wisconsin-Madison, Madison, WI, USA.
DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI, USA.

M A Lachance (MA)

Department of Biology, University of Western Ontario, London N6A 5B7, Ontario, Canada.

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Classifications MeSH

questionsmedicales.fr › Sciences de l'information › Informatique › Biologie informatique › Towards yeast taxogenomics: lessons from novel...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome microbien › Génome fongique › Towards yeast taxogenomics: lessons from novel...
questionsmedicales.fr › Sciences de l'information › Phylogenèse › Towards yeast taxogenomics: lessons from novel...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Analyse de séquence d'ADN › Séquençage du génome entier › Towards yeast taxogenomics: lessons from novel...
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