Comparative Genomics Analyses of Lifestyle Transitions at the Origin of an Invasive Fungal Pathogen in the Genus
Cryphonectria
comparative genomics
lifestyle evolution
tree pathogen
Journal
mSphere
ISSN: 2379-5042
Titre abrégé: mSphere
Pays: United States
ID NLM: 101674533
Informations de publication
Date de publication:
14 10 2020
14 10 2020
Historique:
entrez:
15
10
2020
pubmed:
16
10
2020
medline:
21
7
2021
Statut:
epublish
Résumé
Emerging fungal pathogens are a threat to forest and agroecosystems, as well as animal and human health. How pathogens evolve from nonpathogenic ancestors is still poorly understood, making the prediction of future outbreaks challenging. Most pathogens have evolved lifestyle adaptations, which were enabled by specific changes in the gene content of the species. Hence, understanding transitions in the functions encoded by genomes gives valuable insight into the evolution of pathogenicity. Here, we studied lifestyle evolution in the genus
Identifiants
pubmed: 33055257
pii: 5/5/e00737-20
doi: 10.1128/mSphere.00737-20
pmc: PMC7565894
pii:
doi:
Types de publication
Comparative Study
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Informations de copyright
Copyright © 2020 Stauber et al.
Références
Nat Rev Microbiol. 2005 Dec;3(12):937-47
pubmed: 16322742
Gene. 2011 Jun 15;479(1-2):29-36
pubmed: 21354463
BMC Biol. 2018 Apr 18;16(1):43
pubmed: 29669603
Mycologia. 2002 Jan-Feb;94(1):105-15
pubmed: 21156482
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Bioinformatics. 2016 Mar 1;32(5):767-9
pubmed: 26559507
Phytopathology. 2006 Dec;96(12):1337-44
pubmed: 18943666
Bioinformatics. 2018 Jul 1;34(13):i142-i150
pubmed: 29949969
J Biomol Tech. 2013 Apr;24(1):39-49
pubmed: 23542132
Fungal Biol. 2016 Jun-Jul;120(6-7):827-35
pubmed: 27268243
Annu Rev Phytopathol. 2018 Aug 25;56:21-40
pubmed: 29768136
New Phytol. 2012 Jun;194(4):1001-1013
pubmed: 22463738
Methods Mol Biol. 2019;1962:65-95
pubmed: 31020555
Mycologia. 2006 Mar-Apr;98(2):239-49
pubmed: 16894969
Bioinformatics. 2008 Mar 1;24(5):637-44
pubmed: 18218656
PLoS Pathog. 2014 Jan 30;10(1):e1003859
pubmed: 24497825
Front Microbiol. 2014 Nov 19;5:640
pubmed: 25477876
Angew Chem Int Ed Engl. 2016 Sep 19;55(39):11955-9
pubmed: 27559694
Elife. 2021 Mar 05;10:
pubmed: 33666552
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
New Phytol. 2015 Dec;208(4):1202-16
pubmed: 26137988
Annu Rev Phytopathol. 2012;50:267-94
pubmed: 22726121
Ecol Lett. 2011 Nov;14(11):1108-16
pubmed: 21884563
Annu Rev Phytopathol. 2017 Aug 4;55:61-83
pubmed: 28489497
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
Nat Protoc. 2012 Mar 01;7(3):562-78
pubmed: 22383036
Bioinformatics. 2019 Oct 15;35(20):3961-3969
pubmed: 30903685
IMA Fungus. 2015 Dec;6(2):493-506
pubmed: 26734552
PLoS Pathog. 2020 Feb 27;16(2):e1008315
pubmed: 32106242
Mol Ecol. 2003 Jun;12(6):1619-28
pubmed: 12755889
PLoS Pathog. 2012;8(3):e1002515
pubmed: 22396640
Annu Rev Microbiol. 2013;67:477-98
pubmed: 23808333
Mycol Res. 2008 Feb;112(Pt 2):225-30
pubmed: 18280128
Mol Plant Pathol. 2018 Sep;19(9):2094-2110
pubmed: 29569316
BMC Genomics. 2012 Sep 02;13:444
pubmed: 22937793
PLoS Pathog. 2010 Apr 22;6(4):e1000850
pubmed: 20421942
Phytopathology. 2020 Jun;110(6):1180-1188
pubmed: 32207662
Nat Prod Rep. 2019 Mar 20;36(3):458-475
pubmed: 30191940
Plant J. 2018 Feb;93(4):664-674
pubmed: 29277938
Nat Biotechnol. 2019 Apr;37(4):420-423
pubmed: 30778233
Trop Life Sci Res. 2010 Aug;21(1):101-7
pubmed: 24575194
IMA Fungus. 2015 Jun;6(1):233-48
pubmed: 26203426
Nat Genet. 2006 Aug;38(8):953-6
pubmed: 16832356
Stud Mycol. 2020 Feb 01;96:141-153
pubmed: 32206138
Sci Rep. 2017 Nov 6;7(1):14553
pubmed: 29109463
Trends Ecol Evol. 2010 Jul;25(7):387-95
pubmed: 20434790
Nat Rev Microbiol. 2012 May 08;10(6):417-30
pubmed: 22565130
BMC Bioinformatics. 2006 Feb 09;7:62
pubmed: 16469098
Fungal Biol. 2011 Sep;115(9):852-61
pubmed: 21872182
Curr Opin Plant Biol. 2011 Aug;14(4):400-6
pubmed: 21454120
Genome Biol. 2019 Nov 14;20(1):238
pubmed: 31727128
Genome Biol Evol. 2014 Dec 24;7(2):410-30
pubmed: 25539722
J Comput Biol. 2012 May;19(5):455-77
pubmed: 22506599
Genome Announc. 2018 Apr 5;6(14):
pubmed: 29622620
Genome Announc. 2015 Nov 19;3(6):
pubmed: 26586869
Annu Rev Phytopathol. 2009;47:233-63
pubmed: 19400631
Sci Rep. 2017 Feb 02;7:41801
pubmed: 28150710
Mol Plant Pathol. 2018 Jan;19(1):7-20
pubmed: 28142223
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W445-51
pubmed: 22645317
Nat Microbiol. 2017 Apr 03;2:17044
pubmed: 28368369
Annu Rev Entomol. 2017 Jan 31;62:73-90
pubmed: 27860524
PLoS Genet. 2012;8(11):e1003088
pubmed: 23209441
PLoS One. 2019 May 31;14(5):e0212248
pubmed: 31150449
Mycology. 2018 May 24;9(3):176-188
pubmed: 30181924
Annu Rev Phytopathol. 2014;52:427-51
pubmed: 25001456
Annu Rev Plant Biol. 2015;66:513-45
pubmed: 25923844
BMC Genomics. 2014 Jan 03;15:6
pubmed: 24422981
Fungal Biol. 2010 Nov-Dec;114(11-12):966-79
pubmed: 21036341
Genome Res. 2011 Dec;21(12):2157-66
pubmed: 21994252
Mycologia. 2020 Mar-Apr;112(2):267-292
pubmed: 32091968
Nat Rev Microbiol. 2013 Jan;11(1):21-32
pubmed: 23178386
Mol Biol Evol. 2018 Mar 1;35(3):543-548
pubmed: 29220515
Sci Rep. 2015 Nov 04;5:15565
pubmed: 26531059
Front Microbiol. 2020 Jan 21;10:3088
pubmed: 32038539
Sci Rep. 2018 Nov 1;8(1):16151
pubmed: 30385829
Science. 2010 Dec 10;330(6010):1543-6
pubmed: 21148392
PLoS Pathog. 2012;8(12):e1003037
pubmed: 23236275
Nucleic Acids Res. 2019 Jul 2;47(W1):W81-W87
pubmed: 31032519
Annu Rev Genet. 2016 Nov 23;50:371-392
pubmed: 27732794
Nat Genet. 2012 Sep;44(9):1060-5
pubmed: 22885923
Adv Genet. 2016;94:107-35
pubmed: 27131324