Optimized use of Oxford Nanopore flowcells for hybrid assemblies.

DNA, Bacterial / genetics Enterobacteriaceae / genetics Flow Cytometry / methods Genome, Bacterial / genetics Interspersed Repetitive Sequences / genetics Plasmids / genetics Sequence Analysis, DNA / methods
Enterobacteriaceae Nanopore sequencing bacterial genomics hybrid assembly long-read assembly

Journal

Microbial genomics
ISSN: 2057-5858
Titre abrégé: Microb Genom
Pays: England
ID NLM: 101671820

Informations de publication

Date de publication:
11 2020
Historique:
pubmed: 12 11 2020
medline: 17 8 2021
entrez: 11 11 2020
Statut: ppublish

Résumé

Hybrid assemblies are highly valuable for studies of

Identifiants

DOI: 10.1099/mgen.0.000453 PMID: 33174830 PMC: PMC7725331
pubmed: 33174830
doi: 10.1099/mgen.0.000453
pmc: PMC7725331
doi:

Substances chimiques

DNA, Bacterial 0

Banques de données

figshare
['10.6084/m9.figshare.11816532']

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : MRF
ID : MRF_MRF-145-0004-TPG-AVISO
Pays : United Kingdom
Organisme : Medical Research Council
Pays : United Kingdom
Organisme : Department of Health
Pays : United Kingdom

Références

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pubmed: 26099265
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pubmed: 29026658
Genome Biol. 2004;5(2):R12
pubmed: 14759262
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595
pubmed: 28594827
PLoS Comput Biol. 2018 Nov 20;14(11):e1006583
pubmed: 30458005
Microb Genom. 2019 Sep;5(9):
pubmed: 31483244
Microb Genom. 2017 Sep 14;3(10):e000132
pubmed: 29177090
Genome Biol. 2020 Mar 14;21(1):68
pubmed: 32171299
Microb Genom. 2018 Nov;4(11):
pubmed: 30383524
Bioinformatics. 2018 Sep 15;34(18):3094-3100
pubmed: 29750242
BMC Genomics. 2018 Sep 27;19(1):714
pubmed: 30261842
F1000Res. 2019 Dec 23;8:2138
pubmed: 31984131
Genome Res. 2016 Dec;26(12):1721-1729
pubmed: 27852649
Bioinformatics. 2013 Feb 15;29(4):435-43
pubmed: 23303509
Nat Biotechnol. 2019 May;37(5):540-546
pubmed: 30936562
J Antimicrob Chemother. 2018 May 1;73(5):1121-1137
pubmed: 29370371

Auteurs

Samuel Lipworth (S)

Modernising Medical Microbiology, Nuffield Department of Medicine, University of Oxford, UK.

Hayleah Pickford (H)

Modernising Medical Microbiology, Nuffield Department of Medicine, University of Oxford, UK.

Nicholas Sanderson (N)

NIHR Oxford Biomedical Research Centre, Oxford, UK.
Modernising Medical Microbiology, Nuffield Department of Medicine, University of Oxford, UK.

Kevin K Chau (KK)

Modernising Medical Microbiology, Nuffield Department of Medicine, University of Oxford, UK.

James Kavanagh (J)

Modernising Medical Microbiology, Nuffield Department of Medicine, University of Oxford, UK.

Leanne Barker (L)

Modernising Medical Microbiology, Nuffield Department of Medicine, University of Oxford, UK.

Alison Vaughan (A)

NIHR Oxford Biomedical Research Centre, Oxford, UK.
Modernising Medical Microbiology, Nuffield Department of Medicine, University of Oxford, UK.

Jeremy Swann (J)

NIHR Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance at the University of Oxford in partnership with Public Health England, Oxford, UK.
Modernising Medical Microbiology, Nuffield Department of Medicine, University of Oxford, UK.

Monique Andersson (M)

Department of Clinical Microbiology, Oxford University Hospitals NHS Foundation Trust, John Radcliffe Hospital, Oxford, UK.

Katie Jeffery (K)

Department of Clinical Microbiology, Oxford University Hospitals NHS Foundation Trust, John Radcliffe Hospital, Oxford, UK.

Marcus Morgan (M)

Department of Clinical Microbiology, Oxford University Hospitals NHS Foundation Trust, John Radcliffe Hospital, Oxford, UK.

Timothy E A Peto (TEA)

NIHR Oxford Biomedical Research Centre, Oxford, UK.
Modernising Medical Microbiology, Nuffield Department of Medicine, University of Oxford, UK.

Derrick W Crook (DW)

NIHR Oxford Biomedical Research Centre, Oxford, UK.
Modernising Medical Microbiology, Nuffield Department of Medicine, University of Oxford, UK.
Department of Clinical Microbiology, Oxford University Hospitals NHS Foundation Trust, John Radcliffe Hospital, Oxford, UK.

Nicole Stoesser (N)

Department of Clinical Microbiology, Oxford University Hospitals NHS Foundation Trust, John Radcliffe Hospital, Oxford, UK.
Modernising Medical Microbiology, Nuffield Department of Medicine, University of Oxford, UK.

A Sarah Walker (AS)

Modernising Medical Microbiology, Nuffield Department of Medicine, University of Oxford, UK.
NIHR Oxford Biomedical Research Centre, Oxford, UK.

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Classifications MeSH

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questionsmedicales.fr › Bactéries › Proteobacteria › Gammaproteobacteria › Enterobacteriaceae › Optimized use of Oxford Nanopore flowcells for...
questionsmedicales.fr › Techniques d'investigation › Techniques cytologiques › Cytophotométrie › Cytométrie en flux › Optimized use of Oxford Nanopore flowcells for...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome microbien › Génome bactérien › Optimized use of Oxford Nanopore flowcells for...
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questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Plasmides › Optimized use of Oxford Nanopore flowcells for...
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