Alkanindiges hydrocarboniclasticus sp. nov. Isolated From Crude Oil Contaminated Sands and Emended Description of the Genus Alkanindiges.
Journal
Current microbiology
ISSN: 1432-0991
Titre abrégé: Curr Microbiol
Pays: United States
ID NLM: 7808448
Informations de publication
Date de publication:
Jan 2021
Jan 2021
Historique:
received:
18
07
2020
accepted:
20
10
2020
pubmed:
13
11
2020
medline:
15
5
2021
entrez:
12
11
2020
Statut:
ppublish
Résumé
The taxonomic position of strain H1
Identifiants
pubmed: 33179156
doi: 10.1007/s00284-020-02266-y
pii: 10.1007/s00284-020-02266-y
doi:
Substances chimiques
DNA, Bacterial
0
Fatty Acids
0
Phospholipids
0
RNA, Ribosomal, 16S
0
Sand
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
378-382Subventions
Organisme : Ministry of Education
ID : NRF-2015M3A9B8029697
Références
Bogan BW, Sullivan WR, Kayser KJ, Derr KD, Aldrich HC, Paterek JR (2003) Alkanindiges illinoisensis gen. nov., sp. nov., an obligately hydrocarbonoclastic, aerobic squalane-degrading bacterium isolated from oilfield soils. Int J Syst Evol Microbiol 53:1389–1395
doi: 10.1099/ijs.0.02568-0
Woo PC, Tse H, Lau SK, Leung KW, Woo GK, Wong MK, Ho CM, Yuen KY (2005) Alkanindiges hongkongensis sp. nov. A novel Alkanindiges species isolated from a patient with parotid abscess. Syst Appl Microbiol 28:316–322
doi: 10.1016/j.syapm.2005.01.003
Bogan BW, Lahner LM, Trbovic V, Szajkovics AM, Paterek JR (2001) Effects of alkylphosphates and nitrous oxide on microbial degradation of polycyclic aromatic hydrocarbons. Appl Environ Microbiol 67:2139–2144
doi: 10.1128/AEM.67.5.2139-2144.2001
Cappuccino JG, Sherman N (2008) Microbiology–a laboratory manual, 8th edn. Pearson Benjamin Cummings, Sansome St., San Francisco, CA
Barker J, Maxted H (1975) Observation on the growth and movement of Acinetobacter on semi-solid media. J Med Microbiol 8:443–446
doi: 10.1099/00222615-8-3-443
Subhash Y, Tushar L, Sasikala Ch, Ramana ChV (2013a) Erythrobacter odishensis sp. nov. and Pontibacter odishensis sp. nov. isolated from dry soil of a solar saltern. Int J Syst Evol Microbiol 63:4524–4532
doi: 10.1099/ijs.0.052183-0
Subhash Y, Lee S-S (2016) Skermanella rosea sp. nov., isolated from hydrocarbon contaminated desert sands. Int J Syst Evol Microbiol 66:3951–3956
doi: 10.1099/ijsem.0.001293
Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids, MIDI technical note 101. MIDI Inc, Newark, DE
Subhash Y, Park M-J, Lee S-S (2016) Microvirgula curvata sp. nov., isolated from hydrocarbon contaminated soil and emended description of the genus Microvirgula. Int J Syst Evol Microbiol 66:5309–5313
doi: 10.1099/ijsem.0.001512
Oren A, Duker S, Ritter S (1996) The polar lipid composition of Walsby’s square bacterium. FEMS Microbiol Lett 138:135–140
doi: 10.1111/j.1574-6968.1996.tb08146.x
Hiraishi A, Hoshino Y, Kitamura H (1984) Isoprenoid quinone composition in the classification of Rhodospirillaceae. J Gen Appl Microbiol 30:197–210
doi: 10.2323/jgam.30.197
Subhash Y, Sasikala Ch, Ramana ChV (2013) Flavobacterium aquaticum sp. nov., isolated from a water sample of a rice field. Int J Syst Evol Microbiol 63:3463–3469
doi: 10.1099/ijs.0.050047-0
Yoon SH, Ha SM, Kwon S, Lim J, Kim Y et al (2017) Introducing EzBioCloud: a taxonomically united database of 16S rRNA and whole genome assemblies. Int J Syst Evol Microbiol 67:1613–1617
doi: 10.1099/ijsem.0.001755
Kumar S, Stecher G, Li M, Knyaz C, Tamura KMEGAX (2018) Molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35:1547–1549
doi: 10.1093/molbev/msy096
Kimura M (1980) A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J Mol Evol 16:111–120
doi: 10.1007/BF01731581
Subhash Y, Tushar L, Sasikala Ch, Ramana ChV (2013b) Falsirhodobacter halotolerans gen. nov., sp. nov., isolated from dry soils of a solar saltern. Int J Syst Evol Microbiol 63:2132–2137
doi: 10.1099/ijs.0.044107-0
Marmur J (1961) A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3:208–218
doi: 10.1016/S0022-2836(61)80047-8
Wattam AR, Davis JJ, Assaf R, Boisvert S et al (2017) Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center. Nucleic Acids Res 45:D535–D542
doi: 10.1093/nar/gkw1017
Brettin T, Davis JJ, Disz T, Edwards RA et al (2015) RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Sci Rep 5:8365
doi: 10.1038/srep08365
Meier-Kolthoff JP, Auch AF, Klenk H-P, Göker M (2013) Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinfo 14:60
doi: 10.1186/1471-2105-14-60