Whole-Transcriptome RNA Sequencing Reveals the Global Molecular Responses and CeRNA Regulatory Network of mRNAs, lncRNAs, miRNAs and circRNAs in Response to Salt Stress in Sugar Beet (
Beta vulgaris
/ genetics
Gene Expression Profiling
/ methods
Gene Expression Regulation, Plant
/ drug effects
Gene Ontology
Gene Regulatory Networks
MicroRNAs
/ genetics
Plant Leaves
/ genetics
Plant Roots
/ genetics
RNA, Circular
/ genetics
RNA, Long Noncoding
/ genetics
RNA, Messenger
/ genetics
RNA, Plant
/ genetics
Salinity
Salt Stress
/ genetics
Sodium Chloride
/ pharmacology
Exome Sequencing
/ methods
ceRNA
circRNA
lncRNA
microRNAs
salt stress
sugar beet
whole-transcriptome RNA-seq
Journal
International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791
Informations de publication
Date de publication:
30 Dec 2020
30 Dec 2020
Historique:
received:
02
12
2020
revised:
25
12
2020
accepted:
27
12
2020
entrez:
5
1
2021
pubmed:
6
1
2021
medline:
14
9
2021
Statut:
epublish
Résumé
Sugar beet is an important sugar-yielding crop with some tolerance to salt, but the mechanistic basis of this tolerance is not known. In the present study, we have used whole-transcriptome RNA-seq and degradome sequencing in response to salt stress to uncover differentially expressed (DE) mRNAs, microRNAs (miRNAs), long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) in both leaves and roots. A competitive endogenous RNA (ceRNA) network was constructed with the predicted DE pairs, which revealed regulatory roles under salt stress. A functional analysis suggests that ceRNAs are implicated in copper redistribution, plasma membrane permeability, glycometabolism and energy metabolism, NAC transcription factor and the phosphoinositol signaling system. Overall, we conducted for the first time a full transcriptomic analysis of sugar beet under salt stress that involves a potential ceRNA network, thus providing a basis to study the potential functions of lncRNAs/circRNAs.
Identifiants
pubmed: 33396637
pii: ijms22010289
doi: 10.3390/ijms22010289
pmc: PMC7795855
pii:
doi:
Substances chimiques
MicroRNAs
0
RNA, Circular
0
RNA, Long Noncoding
0
RNA, Messenger
0
RNA, Plant
0
Sodium Chloride
451W47IQ8X
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : National Natural Science Foundation of China
ID : 31571731
Organisme : National Natural Science Foundation of China
ID : 31771864
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