Genomic analysis of bacteriophage Xoo-sp13 infecting Xanthomonas oryzae pv. oryzae.
Bacteriophages
/ classification
Base Composition
Base Sequence
DNA, Viral
/ genetics
Genome, Viral
/ genetics
Host Specificity
Myoviridae
/ classification
Open Reading Frames
Oryza
/ microbiology
Plant Diseases
/ microbiology
RNA, Transfer
/ genetics
Sequence Analysis, DNA
Sequence Homology
Soil Microbiology
Xanthomonas
/ virology
Journal
Archives of virology
ISSN: 1432-8798
Titre abrégé: Arch Virol
Pays: Austria
ID NLM: 7506870
Informations de publication
Date de publication:
Apr 2021
Apr 2021
Historique:
received:
24
09
2020
accepted:
21
12
2020
pubmed:
16
2
2021
medline:
20
3
2021
entrez:
15
2
2021
Statut:
ppublish
Résumé
Xanthomonas oryzae pv. oryzae is a bacterial pathogen that gives rise to diseases in rice all over the world. A bacteriophage infecting this bacterium was isolated from rice fields in China. Here, we report the complete genome sequence of this phage, which has a linear dsDNA genome of 309,023 bp and a G + C content of 42.43%. It contains 401 open reading frames and encodes 28 tRNAs. It belongs to the family Myoviridae and has a broad host range, making it a possible candidate for phage therapy.
Identifiants
pubmed: 33585960
doi: 10.1007/s00705-021-04985-4
pii: 10.1007/s00705-021-04985-4
pmc: PMC7970823
doi:
Substances chimiques
DNA, Viral
0
RNA, Transfer
9014-25-9
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1263-1265Subventions
Organisme : National Science and Technology Program during the Twelfth Five-year Plan Period (CN)
ID : 2018YFA0903000
Références
Nucleic Acids Res. 1991 Oct 11;19(19):5442
pubmed: 1656393
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W686-9
pubmed: 15980563
J Gen Virol. 2018 Oct;99(10):1453-1462
pubmed: 30102145
Methods Mol Biol. 2018;1681:139-163
pubmed: 29134593
Microbiol Resour Announc. 2020 Nov 25;9(48):
pubmed: 33239465
Nucleic Acids Res. 1997 Sep 1;25(17):3389-402
pubmed: 9254694
Arch Virol. 2013 Nov;158(11):2399-403
pubmed: 23680925
Annu Rev Phytopathol. 2014;52:213-41
pubmed: 24906128
Viruses. 2019 Jan 26;11(2):
pubmed: 30691182
BMC Genomics. 2008 Feb 08;9:75
pubmed: 18261238