Identification and characterization of genes related to salt stress tolerance within segregation distortion regions of genetic map in F2 population of upland cotton.
Alleles
Base Sequence
/ genetics
Chromosome Mapping
/ methods
Chromosome Segregation
/ genetics
Gene Expression Regulation, Plant
Gene Frequency
Genes, Plant
Gossypium
/ genetics
MicroRNAs
/ genetics
Phylogeny
Plant Proteins
/ genetics
RNA, Plant
/ genetics
Salt Tolerance
/ genetics
Synteny
/ genetics
Transcription Factors
/ genetics
Transcriptome
Up-Regulation
/ genetics
Journal
PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081
Informations de publication
Date de publication:
2021
2021
Historique:
received:
18
11
2020
accepted:
09
02
2021
entrez:
26
3
2021
pubmed:
27
3
2021
medline:
14
9
2021
Statut:
epublish
Résumé
Segregation distortion (SD) is a genetic mechanism commonly found in segregating or stable populations. The principle behind this puzzles many researchers. The F2 generation developed from wild Gossypium darwinii and G. hirsutum CCRI12 species was used to investigate the possible transcription factors within the segregation distortion regions (SDRs). The 384 out of 2763 markers were distorted in 29 SDRs on 18 chromosomes. Good collinearity was observed among genetic and physical maps of G. hirsutum and G. barbadense syntenic blocks. Total 568 genes were identified from SDRs of 18 chromosomes. Out of these genes, 128 belonged to three top-ranked salt-tolerant gene families. The DUF597 contained 8 uncharacterized genes linked to Pkinase (PF00069) gene family in the phylogenetic tree, while 15 uncharacterized genes clustered with the zinc finger gene family. Two hundred thirty four miRNAs targeted numerous genes, including ghr-miR156, ghr-miR399 and ghr-miR482, while others targeted top-ranked stress-responsive transcription factors. Moreover, these genes were involved in the regulation of numerous stress-responsive cis-regulatory elements. The RNA sequence data of fifteen upregulated genes were verified through the RT-qPCR. The expression profiles of two highly upregulated genes (Gh_D01G2015 and Gh_A01G1773) in salt-tolerant G. darwinii showed antagonistic expression in G. hirsutum. The results indicated that salt-tolerant genes have been possibly transferred from the wild G. darwinii species. A detailed functional analysis of these genes can be carried out which might be helpful in the future for gene cloning, transformation, gene editing and the development of salt-resistant cotton varieties.
Identifiants
pubmed: 33770112
doi: 10.1371/journal.pone.0247593
pii: PONE-D-20-35198
pmc: PMC7997035
doi:
Substances chimiques
MicroRNAs
0
Plant Proteins
0
RNA, Plant
0
Transcription Factors
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Retracted Publication
Langues
eng
Sous-ensembles de citation
IM
Pagination
e0247593Commentaires et corrections
Type : RetractionIn
Déclaration de conflit d'intérêts
The authors have declared that no competing interests exist.
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