Olea Europaea Geminivirus: A Novel Bipartite Geminivirid Infecting Olive Trees.
Geminiviridae
high-throughput sequencing
olive trees
small RNA
ssDNA-virus
total DNA library
Journal
Viruses
ISSN: 1999-4915
Titre abrégé: Viruses
Pays: Switzerland
ID NLM: 101509722
Informations de publication
Date de publication:
15 03 2021
15 03 2021
Historique:
received:
15
01
2021
revised:
05
03
2021
accepted:
11
03
2021
entrez:
3
4
2021
pubmed:
4
4
2021
medline:
13
8
2021
Statut:
epublish
Résumé
In 2014, high-throughput sequencing of libraries of total DNA from olive trees allowed the identification of two geminivirus-like contigs. After conventional resequencing of the two genomic DNAs, their analysis revealed they belonged to the same viral entity, for which the provisional name of Olea europaea geminivirus (OEGV) was proposed. Although DNA-A showed a genome organization similar to that of New World begomoviruses, DNA-B had a peculiar ORF arrangement, consisting of a movement protein (MP) in the virion sense and a protein with unknown function on the complementary sense. Phylogenetic analysis performed either on full-length genome or on coat protein, replication associated protein (Rep), and MP sequences did not endorse the inclusion of this virus in any of the established genera in the family
Identifiants
pubmed: 33804134
pii: v13030481
doi: 10.3390/v13030481
pmc: PMC8000510
pii:
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Références
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549
pubmed: 29722887
Plant Cell Physiol. 2008 Apr;49(4):493-500
pubmed: 18344228
Phytopathology. 2017 Feb;107(2):240-251
pubmed: 27670772
Virus Res. 2019 Apr 2;263:169-172
pubmed: 30707911
J Virol Methods. 2014 Jan;195:120-2
pubmed: 24134945
Plant Cell. 1998 Jun;10(6):937-46
pubmed: 9634582
Front Microbiol. 2018 Jan 12;8:2665
pubmed: 29375528
Virus Res. 2016 Oct 2;225:10-22
pubmed: 27586073
Arch Virol. 2014 Nov;159(11):3131-6
pubmed: 25091738
Plant J. 2012 Jan;69(1):104-15
pubmed: 21880078
Biochim Biophys Acta. 2010 Mar-Apr;1799(3-4):337-51
pubmed: 20079472
Cell. 2008 Apr 4;133(1):116-27
pubmed: 18342361
J Biol Chem. 1994 Mar 18;269(11):8459-65
pubmed: 8132573
Bioinformatics. 2008 Jul 1;24(13):1530-1
pubmed: 18467344
Nucleic Acids Res. 2015 Jan;43(Database issue):D222-6
pubmed: 25414356
Arch Virol. 2015 Jan;160(1):17-20
pubmed: 25430908
Curr Opin Virol. 2018 Oct;32:88-99
pubmed: 30388659
J Gen Virol. 2017 Feb;98(2):131-133
pubmed: 28284245
Plant Dis. 2018 Jul;102(7):1246-1253
pubmed: 30673580
Plants (Basel). 2020 Sep 27;9(10):
pubmed: 32992518
Virology. 2015 May;479-480:46-51
pubmed: 25824477
Virus Res. 2015 Dec 2;210:27-33
pubmed: 26186890
PLoS Pathog. 2012 Sep;8(9):e1002941
pubmed: 23028332
Arch Virol. 2015 Jun;160(6):1593-619
pubmed: 25894478
PLoS One. 2014 Sep 26;9(9):e108277
pubmed: 25259891
Nucleic Acids Res. 2006;34(21):6233-46
pubmed: 17090584
Nucleic Acids Res. 2018 Jan 4;46(D1):D493-D496
pubmed: 29040681
Proc Natl Acad Sci U S A. 1995 Apr 25;92(9):3879-83
pubmed: 7732000
Crit Rev Biochem Mol Biol. 2000;35(2):105-40
pubmed: 10821479
Cell. 2008 Apr 4;133(1):25-6
pubmed: 18394983
EMBO J. 2006 Jul 26;25(14):3347-56
pubmed: 16810317
J Gen Virol. 2012 Sep;93(Pt 9):1853-1868
pubmed: 22647373
Trends Cell Biol. 1996 Sep;6(9):353-8
pubmed: 15157433
Genome Res. 2008 May;18(5):802-9
pubmed: 18332092
Nucleic Acids Res. 2003 Jul 1;31(13):3406-15
pubmed: 12824337
Mol Plant Microbe Interact. 2016 Nov;29(11):878-888
pubmed: 27762650
Nat Rev Microbiol. 2013 Nov;11(11):777-88
pubmed: 24100361
Virology. 2003 Jul 20;312(1):106-21
pubmed: 12890625
Cell. 1994 Mar 11;76(5):925-32
pubmed: 8124726
Front Plant Sci. 2012 Aug 09;3:179
pubmed: 22908024
Virus Res. 2013 May;173(2):286-93
pubmed: 23415858
Methods Mol Biol. 2018;1746:27-36
pubmed: 29492883
Nat Rev Microbiol. 2013 Nov;11(11):745-60
pubmed: 24129510
Microbiol Mol Biol Rev. 2012 Jun;76(2):159-216
pubmed: 22688811
Bioinformatics. 2011 Aug 1;27(15):2156-8
pubmed: 21653522
Nucleic Acids Res. 2011 Jul;39(12):5003-14
pubmed: 21378120
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
J Virol. 2014 Oct;88(20):11933-45
pubmed: 25100851
J Virol. 2005 Feb;79(4):2517-27
pubmed: 15681452
PLoS One. 2011 Feb 09;6(2):e16928
pubmed: 21347388
J Gen Virol. 2015 Aug;96(8):2411-2420
pubmed: 25934791
Plant Cell. 2015 Jun;27(6):1742-54
pubmed: 26023161
Mol Cell. 2010 May 14;38(3):465-75
pubmed: 20381393
Annu Rev Plant Biol. 2009;60:485-510
pubmed: 19519217
Proc Natl Acad Sci U S A. 1996 Jan 23;93(2):759-64
pubmed: 8570630
BMC Plant Biol. 2012 Nov 07;12:204
pubmed: 23130567
Annu Rev Plant Biol. 2014;65:473-503
pubmed: 24579988
Arch Virol. 2018 Jan;163(1):259-262
pubmed: 28942517
Phytopathology. 2013 Oct;103(10):1069-76
pubmed: 23656312
Cell Mol Life Sci. 1999 Oct 15;56(3-4):313-29
pubmed: 11212359
Mol Plant Pathol. 2011 Dec;12(9):938-54
pubmed: 22017770
Viruses. 2018 Aug 17;10(8):
pubmed: 30126105
Virology. 2012 Oct 10;432(1):162-72
pubmed: 22749878
Virus Evol. 2015 May 26;1(1):vev002
pubmed: 27774276
J Gen Virol. 2016 Nov;97(11):3073-3087
pubmed: 27604547
Plant Cell. 2010 Dec;22(12):3879-89
pubmed: 21183704
Int J Mol Sci. 2013 Jul 24;14(8):15233-59
pubmed: 23887650
J Virol. 2012 Jul;86(14):7715
pubmed: 22733880
Nucleic Acids Res. 1980 Oct 10;8(19):4321-5
pubmed: 7433111
J Gen Virol. 2015 Aug;96(8):2421-2434
pubmed: 25953916
Nature. 2010 May 6;465(7294):106-9
pubmed: 20410883
J Mol Biol. 1990 Oct 5;215(3):403-10
pubmed: 2231712
Proc Natl Acad Sci U S A. 2008 Sep 23;105(38):14732-7
pubmed: 18799732
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147