Phylogenomic analysis and characterization of carbon monoxide utilization genes in the family Phyllobacteriaceae with reclassification of Aminobacter carboxidus (Meyer et al. 1993, Hördt et al. 2020) as Aminobacter lissarensis comb. nov. (McDonald et al. 2005).

Bacterial Typing Techniques Carbon Monoxide DNA, Bacterial Multilocus Sequence Typing Phyllobacteriaceae / classification Phylogeny RNA, Ribosomal, 16S / genetics Rhizobiaceae Sequence Analysis, DNA
Aminobacter carboxidus Aminobacter lissarensis Reclassification

Journal

Systematic and applied microbiology
ISSN: 1618-0984
Titre abrégé: Syst Appl Microbiol
Pays: Germany
ID NLM: 8306133

Informations de publication

Date de publication:
May 2021
Historique:
received: 30 12 2020
revised: 27 02 2021
accepted: 09 03 2021
pubmed: 14 4 2021
medline: 14 10 2021
entrez: 13 4 2021
Statut: ppublish

Résumé

The monotypic carboxydophilic genus Carbophilus has recently been transferred to the genus Aminobacter within the family Phyllobacteriaceae, and Carbophilus carboxidus was renamed Aminobacter carboxidus (comb. nov.) [Hördt et al. 2020]. Due to the poor resolution of the 16S rRNA gene-based phylogeny, an extensive phylogenomic analysis of the family Phyllobacteriaceae was conducted, with particular focus on the genus Aminobacter. Whole genome-based analyses of Phyllobacteriaceae type strains provided evidenced that the genus Aminobacter forms a monophyletic cluster, clearly demarcated from all other members of the family. Close relatedness between A. carboxidus DSM 1086

Identifiants

DOI: 10.1016/j.syapm.2021.126199 PMID: 33848814
pubmed: 33848814
pii: S0723-2020(21)00022-9
doi: 10.1016/j.syapm.2021.126199
pii:
doi:

Substances chimiques

DNA, Bacterial 0
RNA, Ribosomal, 16S 0
Carbon Monoxide 7U1EE4V452

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

126199

Informations de copyright

Copyright © 2021 Elsevier GmbH. All rights reserved.

Auteurs

Irene Artuso (I)

Department of Science, Roma Tre University, Viale G. Marconi 446, 00146 Rome, Italy.

Paolo Turrini (P)

Department of Science, Roma Tre University, Viale G. Marconi 446, 00146 Rome, Italy.

Mattia Pirolo (M)

Department of Science, Roma Tre University, Viale G. Marconi 446, 00146 Rome, Italy.

Massimiliano Lucidi (M)

Department of Science, Roma Tre University, Viale G. Marconi 446, 00146 Rome, Italy.

Marco Tescari (M)

Department of Science, Roma Tre University, Viale G. Marconi 446, 00146 Rome, Italy.

Daniela Visaggio (D)

Department of Science, Roma Tre University, Viale G. Marconi 446, 00146 Rome, Italy.

Antonella Mansi (A)

Department of Occupational and Environmental Medicine, Epidemiology and Hygiene, Italian Workers' Compensation Authority (INAIL), Monte Porzio Catone, Rome, Italy.

Gabriele Andrea Lugli (GA)

Laboratory of Probiogenomics, Department of Chemistry, Life Sciences, and Environmental Sustainability, University of Parma, Parco Area delle Scienze 11a, 43124 Parma, Italy.

Marco Ventura (M)

Laboratory of Probiogenomics, Department of Chemistry, Life Sciences, and Environmental Sustainability, University of Parma, Parco Area delle Scienze 11a, 43124 Parma, Italy.

Paolo Visca (P)

Department of Science, Roma Tre University, Viale G. Marconi 446, 00146 Rome, Italy. Electronic address: paolo.visca@uniroma3.it.

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Classifications MeSH

questionsmedicales.fr › Techniques d'investigation › Techniques de laboratoire clinique › Techniques microbiologiques › Techniques bactériologiques › Techniques de typage bactérien › Phylogenomic analysis and characterization of...
questionsmedicales.fr › Produits chimiques inorganiques › Composés de l'oxygène › Oxydes › Monoxyde de carbone › Phylogenomic analysis and characterization of...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Acides nucléiques › ADN › ADN bactérien › Phylogenomic analysis and characterization of...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Analyse de séquence d'ADN › Typage par séquençage multilocus › Phylogenomic analysis and characterization of...
questionsmedicales.fr › Bactéries › Proteobacteria › Alphaproteobacteria › Phyllobacteriaceae › Phylogenomic analysis and characterization of...
questionsmedicales.fr › Sciences de l'information › Phylogenèse › Phylogenomic analysis and characterization of...
questionsmedicales.fr › Acides nucléiques, nucléotides et nucléosides › Acides nucléiques › ARN › ARN ribosomique › ARN ribosomique 16S › Phylogenomic analysis and characterization of...
questionsmedicales.fr › Bactéries › Proteobacteria › Alphaproteobacteria › Rhizobiaceae › Phylogenomic analysis and characterization of...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Analyse de séquence d'ADN › Phylogenomic analysis and characterization of...