Structure and biosynthesis of sorangipyranone - a new γ-dihydropyrone from the myxobacterial strain MSr12020.


Journal

Journal of industrial microbiology & biotechnology
ISSN: 1476-5535
Titre abrégé: J Ind Microbiol Biotechnol
Pays: Germany
ID NLM: 9705544

Informations de publication

Date de publication:
04 Jun 2021
Historique:
received: 14 12 2020
accepted: 13 05 2021
pubmed: 19 5 2021
medline: 20 7 2021
entrez: 18 5 2021
Statut: ppublish

Résumé

Sorangipyranone was isolated as a novel natural product featuring a unique 2,3-dihydro-γ-4H-pyrone scaffold from cultures of the myxobacterial strain MSr12020. We report here the full structure elucidation of sorangipyranone by spectroscopic techniques including 2D NMR and high-resolution mass spectrometry together with the analysis of the biosynthetic pathway. Determination of the absolute configuration was performed by time-dependent density functional theory-electronic circular dichroism calculations and determination of the applicability of the Snatzke's helicity rule, to correlate the high-wavelength n→π* electronic circular dichroism (ECD) transition and the absolute configuration of the 2,3-dihydro-4H-γ-pyrone, was done by the analysis of low-energy conformers and the Kohn-Sham orbitals. Sorangipyranone outlines a new class of a γ-dihydropyrone-containing natural product comprised of malonyl-CoA-derived building blocks and features a unique polyketide scaffold. In silico analysis of the genome sequence of the myxobacterial strain MSr12020 complemented with feeding experiments employing stable isotope-labeled precursors allowed the identification and annotation of a candidate biosynthetic gene cluster that encodes a modular polyketide synthase assembly line. A model for the biosynthetic pathway leading to the formation of the γ-dihydropyrone scaffold is presented in this study.

Identifiants

pubmed: 34003283
pii: 6277809
doi: 10.1093/jimb/kuab029
pmc: PMC9113121
pii:
doi:

Substances chimiques

Biological Products 0
Polyketides 0
Polyketide Synthases 79956-01-7

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

© The Author(s) 2021. Published by Oxford University Press on behalf of Society of Industrial Microbiology and Biotechnology.

Références

Nat Prod Rep. 2017 Feb 1;34(2):135-160
pubmed: 27907217
Org Lett. 2001 Jan 25;3(2):247-50
pubmed: 11430046
Phytochemistry. 2005 Sep;66(18):2177-215
pubmed: 16153414
Metab Eng. 2017 Nov;44:160-170
pubmed: 29030273
Bioinformatics. 2012 Jun 15;28(12):1647-9
pubmed: 22543367
J Nat Prod. 1998 May;61(5):677-80
pubmed: 9599278
Front Microbiol. 2016 May 26;7:781
pubmed: 27303375
Nucleic Acids Res. 2016 Jan 4;44(D1):D279-85
pubmed: 26673716
Mar Drugs. 2018 Aug 29;16(9):
pubmed: 30158489
Curr Top Microbiol Immunol. 2016;398:273-302
pubmed: 27704272
Org Lett. 2012 Jun 1;14(11):2854-7
pubmed: 22616796
Curr Med Chem. 2018;25(2):287-320
pubmed: 28294053
J Nat Prod. 2020 Mar 27;83(3):770-803
pubmed: 32162523
Nat Prod Rep. 2012 Oct;29(10):1238-50
pubmed: 22850796
Angew Chem Int Ed Engl. 2008;47(3):600-2
pubmed: 18058875
J Am Chem Soc. 2014 Aug 27;136(34):11853-9
pubmed: 25074019
Mar Drugs. 2018 Aug 17;16(8):
pubmed: 30126132
J Nat Prod. 2014 Feb 28;77(2):320-6
pubmed: 24460410
J Antibiot (Tokyo). 2002 Jun;55(6):543-51
pubmed: 12195959
Int J Med Microbiol. 2014 Jan;304(1):72-8
pubmed: 24079981
Microorganisms. 2018 Aug 11;6(3):
pubmed: 30103481
Metab Eng. 2019 Sep;55:201-211
pubmed: 31340171
Chembiochem. 2013 Sep 2;14(13):1581-9
pubmed: 23983106
J Chem Phys. 2008 Feb 28;128(8):084106
pubmed: 18315032
J Antibiot (Tokyo). 2006 Dec;59(12):785-90
pubmed: 17323645
ACS Chem Biol. 2019 Jan 18;14(1):88-98
pubmed: 30543288
J Am Chem Soc. 2010 Oct 27;132(42):14697-9
pubmed: 20925342
Chem Sci. 2015 Aug 1;6(8):5076-5085
pubmed: 29308173
Org Lett. 2014 Mar 7;16(5):1390-3
pubmed: 24533828
Chirality. 2010 Feb;22(2):229-33
pubmed: 19408332
J Nat Prod. 2014 Jun 27;77(6):1420-9
pubmed: 24848583
J Antibiot (Tokyo). 1995 Sep;48(9):973-6
pubmed: 7592065
Genome Res. 2017 May;27(5):722-736
pubmed: 28298431
Chembiochem. 2015 Apr 13;16(6):946-53
pubmed: 25757034
J Antibiot (Tokyo). 1992 Sep;45(9):1549-52
pubmed: 1429243
Cell Death Dis. 2014 Jan 16;5:e1001
pubmed: 24434509
mSystems. 2017 Nov 14;2(6):
pubmed: 29152584
Nat Prod Rep. 2012 Oct;29(10):1050-73
pubmed: 22858605
Chemistry. 2017 Nov 13;23(63):15917-15921
pubmed: 28944573
Nat Prod Rep. 2019 Jun 19;36(6):889-918
pubmed: 31139804
Phytochemistry. 2003 Jun;63(4):471-4
pubmed: 12770601
Trends Microbiol. 2018 Oct;26(10):833-840
pubmed: 29801772
Angew Chem Int Ed Engl. 2015 Aug 24;54(35):10145-8
pubmed: 26031409
Org Biomol Chem. 2018 Jan 17;16(3):393-401
pubmed: 29090729
Bioorg Med Chem. 2009 Mar 15;17(6):2304-9
pubmed: 19042133
Angew Chem Int Ed Engl. 2006 Mar 27;45(14):2296-301
pubmed: 16506259
Chirality. 2016 Jun;28(6):453-9
pubmed: 27172768
Int J Syst Evol Microbiol. 2018 Oct;68(10):3101-3110
pubmed: 30113300
Trends Biotechnol. 2019 May;37(5):492-504
pubmed: 30392727
Mar Drugs. 2019 May 30;17(6):
pubmed: 31151260
Chem Biol. 2008 Nov 24;15(11):1231-40
pubmed: 19022183
Genome Res. 2009 Jun;19(6):1117-23
pubmed: 19251739
J Antibiot (Tokyo). 1983 Dec;36(12):1651-8
pubmed: 6420386
Molecules. 2020 Jun 09;25(11):
pubmed: 32527018
J Org Chem. 2006 Jan 6;71(1):117-24
pubmed: 16388626
Chem Biol. 2002 May;9(5):575-83
pubmed: 12031664
Chembiochem. 2008 Dec 15;9(18):2997-3003
pubmed: 19040244
Nucleic Acids Res. 2019 Jul 2;47(W1):W81-W87
pubmed: 31032519

Auteurs

Dorothy A Okoth (DA)

Department Microbial Natural Products, Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research (HZI), Saarland University, Campus E8 1, 66123 Saarbrücken, 66123 Saarbrücken, Germany.
German Center for Infection Research (DZIF), Partner Site Hannover-Braunschweig Inhoffenstraße 7, 38124 Braunschweig, Germany.

Joachim J Hug (JJ)

Department Microbial Natural Products, Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research (HZI), Saarland University, Campus E8 1, 66123 Saarbrücken, 66123 Saarbrücken, Germany.
German Center for Infection Research (DZIF), Partner Site Hannover-Braunschweig Inhoffenstraße 7, 38124 Braunschweig, Germany.

Attila Mándi (A)

Department of Organic Chemistry, University of Debrecen, P. O. Box 400, 4002 Debrecen, Hungary.

Tibor Kurtán (T)

Department of Organic Chemistry, University of Debrecen, P. O. Box 400, 4002 Debrecen, Hungary.

Ronald Garcia (R)

Department Microbial Natural Products, Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research (HZI), Saarland University, Campus E8 1, 66123 Saarbrücken, 66123 Saarbrücken, Germany.
German Center for Infection Research (DZIF), Partner Site Hannover-Braunschweig Inhoffenstraße 7, 38124 Braunschweig, Germany.

Rolf Müller (R)

Department Microbial Natural Products, Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research (HZI), Saarland University, Campus E8 1, 66123 Saarbrücken, 66123 Saarbrücken, Germany.
German Center for Infection Research (DZIF), Partner Site Hannover-Braunschweig Inhoffenstraße 7, 38124 Braunschweig, Germany.

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Classifications MeSH