RNAseq reveals different transcriptomic responses to GA
Agriculture
/ methods
Anthocyanins
/ metabolism
Base Sequence
/ genetics
Fruit
/ genetics
Gene Expression
/ genetics
Gene Expression Profiling
/ methods
Gene Expression Regulation, Plant
/ genetics
Gibberellins
/ metabolism
Indoleacetic Acids
/ metabolism
Plant Growth Regulators
/ metabolism
Plant Proteins
/ genetics
Prunus avium
/ genetics
Sequence Analysis, RNA
/ methods
Transcription Factors
/ metabolism
Transcriptome
/ genetics
Journal
Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288
Informations de publication
Date de publication:
22 06 2021
22 06 2021
Historique:
received:
30
01
2021
accepted:
28
05
2021
entrez:
23
6
2021
pubmed:
24
6
2021
medline:
9
11
2021
Statut:
epublish
Résumé
Gibberellin (GA) negatively affects color evolution and other ripening-related processes in non-climacteric fruits. The bioactive GA, gibberellic acid (GA
Identifiants
pubmed: 34158527
doi: 10.1038/s41598-021-92080-8
pii: 10.1038/s41598-021-92080-8
pmc: PMC8219793
doi:
Substances chimiques
Anthocyanins
0
Gibberellins
0
Indoleacetic Acids
0
Plant Growth Regulators
0
Plant Proteins
0
Transcription Factors
0
gibberellic acid
BU0A7MWB6L
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
13075Références
Fortes, A. M., Teixeira, R. T. & Agudelo-Romero, P. Complex interplay of hormonal signals during grape berry ripening. Molecules 20, 9326–9343 (2015).
pubmed: 26007186
pmcid: 6272489
doi: 10.3390/molecules20059326
Jia, H. et al. Abscisic acid, sucrose, and auxin coordinately regulate berry ripening process of the Fujiminori grape. Funct. Integr. Genom. 17, 441–457 (2017).
doi: 10.1007/s10142-017-0546-z
Wheeler, S., Loveys, B., Ford, C. & Davies, C. The relationship between the expression of abscisic acid biosynthesis genes accumulation of abscisic acid and the promotion of Vitis vinifera L. berry ripening by abscisic acid. Aust. J. Grape Wine Res. 15, 195–204 (2009).
doi: 10.1111/j.1755-0238.2008.00045.x
Ren, J. et al. Role of abscisic acid and ethylene in sweet cherry fruit maturation: molecular aspects. N. Z. J. Crop Hortic. Sci. 39, 161–174 (2011).
doi: 10.1080/01140671.2011.563424
Teribia, N., Tijero, V. & Munné-Bosch, S. Linking hormonal profiles with variations in sugar and anthocyanin contents during the natural development and ripening of sweet cherries. New Biotechnol. 33, 824–833 (2016).
doi: 10.1016/j.nbt.2016.07.015
Gouthu, S. & Deluc, L. G. Timing of ripening initiation in grape berries and its relationship to seed content and pericarp auxin levels. BMC Plant Biol. 15, 46 (2015).
pubmed: 25848949
pmcid: 4340107
doi: 10.1186/s12870-015-0440-6
Davies, C., Boss, P. K. & Robinson, S. P. Treatment of grape berries, a non-climacteric fruit with a synthetic auxin, retards ripening and alters the expression of developmentally regulated genes. Plant Physiol. 115, 1155–1161 (1997).
pubmed: 12223864
pmcid: 158580
doi: 10.1104/pp.115.3.1155
Wang, Y. et al. Transcriptional regulation of PaPYLs, PaPP2Cs and PaSnRK2s during sweet cherry fruit development and in response to abscisic acid and auxin at onset of fruit ripening. Plant Growth Regul. 75, 455–464 (2015).
doi: 10.1007/s10725-014-0006-x
Giacomelli, L. et al. Gibberellin metabolism in Vitis vinifera L. during bloom and fruit-set: functional characterization and evolution of grapevine gibberellin oxidases. J. Exp. Bot. 64, 4403–4419 (2013).
pubmed: 24006417
pmcid: 3808322
doi: 10.1093/jxb/ert251
Csukasi, F. et al. Gibberellin biosynthesis and signalling during development of the strawberry receptacle. New Phytol. 191, 376–390 (2011).
pubmed: 21443649
doi: 10.1111/j.1469-8137.2011.03700.x
Fortes, A. M. et al. Transcript and metabolite analysis in Trincadeira cultivar reveals novel information regarding the dynamics of grape ripening. BMC Plant Biol. 11, 149 (2011).
pubmed: 22047180
pmcid: 3215662
doi: 10.1186/1471-2229-11-149
Gambetta, G. A., Matthews, M. A., Shaghasi, T. H., McElrone, A. J. & Castellarin, S. D. Sugar and abscisic acid signaling orthologs are activated at the onset of ripening in grape. Planta 232, 219–234 (2010).
pubmed: 20407788
pmcid: 2872022
doi: 10.1007/s00425-010-1165-2
Kondo, S. & Danjo, C. Cell wall polysaccharide metabolism during fruit development in sweet cherry ‘Satohnishiki’ as affected by gibberellic acid. J. Jpn. Soc. Hortic. Sci. 70, 178–184 (2001).
doi: 10.2503/jjshs.70.178
Choi, C., Toivonen, P., Wiersma, P. A. & Kappel, F. Effect of gibberellic acid during development of sweet cherry fruit: Physiological and molecular changes. Acta Hortic. 636, 429–495 (2004).
Kappel, F. & MacDonald, R. A. Gibberellic acid increases fruit firmness, fruit size, and delays maturity of ‘Sweetheart’ sweet cherry. J. Am. Pom. Soc. 56, 21 (2002).
Usenik, V., Kastelec, D. & Štampar, F. Physicochemical changes of sweet cherry fruits related to application of gibberellic acid. Food Chem. 90, 663–671 (2005).
doi: 10.1016/j.foodchem.2004.04.027
Kuhn, N. et al. Gibberellic acid modifies the transcript abundance of ABA pathway orthologs and modulates sweet cherry (Prunus avium) fruit ripening in early- and mid-season varieties. Plants 9, 1796 (2020).
pmcid: 7767171
doi: 10.3390/plants9121796
Alkio, M., Jonas, U., Declercq, M., Van Nocker, S. & Knoche, M. Transcriptional dynamics of the developing sweet cherry (Prunus avium L.) fruit: sequencing, annotation and expression profiling of exocarp-associated genes. Hort Res. 1, 1–15 (2014).
Wei, H. et al. Comparative transcriptome analysis of genes involved in anthocyanin biosynthesis in the red and yellow fruits of sweet cherry (Prunus avium L.). PLoS ONE 10, e0121164 (2015).
pubmed: 25799516
pmcid: 4370391
doi: 10.1371/journal.pone.0121164
Guo, X. et al. Transcriptomic analysis of light-dependent anthocyanin accumulation in bicolored cherry fruits. Plant Physiol. Biochem 130, 663–677 (2018).
pubmed: 30131207
doi: 10.1016/j.plaphy.2018.08.016
Chai, L. et al. RNA sequencing reveals high resolution expression change of major plant hormone pathway genes after young seedless grape berries treated with gibberellin. Plant Sci. 229, 215–224 (2014).
pubmed: 25443848
doi: 10.1016/j.plantsci.2014.09.010
Jiang, S., Luo, J., Xu, F. & Zhang, X. Transcriptome analysis reveals candidate genes involved in gibberellin-induced fruit setting in triploid loquat (Eriobotrya japonica). Front. Plant Sci. 7, 1924 (2016).
pubmed: 28066478
pmcid: 5174095
doi: 10.3389/fpls.2016.01924
Wen, B. et al. Identification and characterization of cherry (Cerasus pseudocerasus G. Don) genes responding to parthenocarpy induced by GA3 through transcriptome analysis. BMC Genet. 20, 65 (2019).
pubmed: 31370778
pmcid: 6670208
doi: 10.1186/s12863-019-0746-8
Rodrigo, F. J. & Guerra, M. La fruticultura del S. XXI. Ed. Cajamar, 107–123 (2014).
Nagpala, E. G. L. et al. Cherry-Meter: an innovative non-destructive (vis/NIR) device for cherry fruit ripening and quality assessment. Acta Hortic. 1161, 491–496 (2013).
Costa, G., Vidoni, S. & Rocchi, L. Use of non-destructive devices to support pre-and postharvest fruit management. Acta Hortic. 1119, 329–335 (2014).
Xiao, K. et al. DNA methylation is involved in pepper (Capsicum annuum L.) fruit ripening regulation and interacts with phytohormones. J. Exp. Bot. 71, 1928–1942 (2020).
pubmed: 31907544
pmcid: 7242076
doi: 10.1093/jxb/eraa003
Einhorn, T. C., Wang, Y. & Turner, J. Sweet cherry fruit firmness and postharvest quality of late-maturing cultivars are improved with low-rate, single applications of gibberellic acid. HortScience 48, 1010–1017 (2013).
doi: 10.21273/HORTSCI.48.8.1010
Wen, Y., Su, S. C., Ma, L. Y. & Wang, X. N. Effects of gibberellic acid on photosynthesis and endogenous hormones of Camellia oleifera Abel. in 1st and 6th leaves. J. Forest Res. 23, 309–317 (2018).
doi: 10.1080/13416979.2018.1512394
Zhou, B. et al. Heterologous expression of a Gibberellin 2-Oxidase gene from Arabidopsis thaliana enhanced the photosynthesis capacity in Brassica napus L. J. Plant Biol. 54, 23–32 (2011).
doi: 10.1007/s12374-010-9139-2
Liu, D. J., Chen, J. Y. & Lu, W. J. Expression and regulation of the early auxin-responsive Aux/IAA genes during strawberry fruit development. Mol. Biol. Rep. 38, 1187–1193 (2011).
pubmed: 20563652
doi: 10.1007/s11033-010-0216-x
Luo, H. et al. The role of ABA in the maturation and postharvest life of a non-climacteric sweet cherry fruit. J. Plant Growth Regul. 33, 373–383 (2014).
doi: 10.1007/s00344-013-9388-7
Shen, X. et al. A role for PacMYBA in ABA-regulated anthocyanin biosynthesis in red-colored sweet cherry cv. Hong Deng (Prunus avium L.). Plant Cell Physiol. 55, 862–880 (2014).
pubmed: 24443499
doi: 10.1093/pcp/pcu013
Carrari, F., Fernie, A. R. & Iusem, N. D. Heard it through the grapevine? ABA and sugar cross-talk: the ASR story. Trends Plant Sci. 9, 57–59 (2004).
pubmed: 15106586
doi: 10.1016/j.tplants.2003.12.004
Li, Q. et al. PacCYP707A2 negatively regulates cherry fruit ripening while PacCYP707A1 mediates drought tolerance. J. Exp. Bot. 66, 3765–3774 (2015).
pubmed: 25956880
pmcid: 4473978
doi: 10.1093/jxb/erv169
Sun, L. et al. Reciprocity between abscisic acid and ethylene at the onset of berry ripening and after harvest. BMC Plant Biol. 10, 257 (2010).
pubmed: 21092180
pmcid: 3095336
doi: 10.1186/1471-2229-10-257
Nguyen, N. H. & Cheong, J. J. AtMYB44 interacts with TOPLESS-RELATED corepressors to suppress protein phosphatase 2C gene transcription. Biochem. Biophys. Res. Comm. 507, 437–442 (2018).
pubmed: 30448055
doi: 10.1016/j.bbrc.2018.11.057
Umezawa, T. et al. Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis. Proc. Natl Acad. Sci. 106, 17588–17593 (2009).
pubmed: 19805022
doi: 10.1073/pnas.0907095106
pmcid: 2754379
Seo, J. S. et al. Expression of the Arabidopsis AtMYB44 gene confers drought/salt-stress tolerance in transgenic soybean. Mol. Breed. 29, 601–608 (2012).
doi: 10.1007/s11032-011-9576-8
Fasoli, M. et al. Timing and order of the molecular events marking the onset of berry ripening in grapevine. Plant Physiol. 178, 1187–1206 (2018).
pubmed: 30224433
pmcid: 6236592
doi: 10.1104/pp.18.00559
Ohmiya, A., Kishimoto, S., Aida, R., Yoshioka, S. & Sumitomo, K. Carotenoid cleavage dioxygenase (CmCCD4a) contributes to white color formation in chrysanthemum petals. Plant Physiol 142, 1193–1201 (2006).
pubmed: 16980560
pmcid: 1630759
doi: 10.1104/pp.106.087130
Gallusci, P., Hodgman, C., Teyssier, E. & Seymour, G. B. DNA methylation and chromatin regulation during fleshy fruit development and ripening. Front. Plant Sci. 7, 807 (2016).
pubmed: 27379113
pmcid: 4905957
doi: 10.3389/fpls.2016.00807
El-Sharkawy, I., Liang, D. & Xu, K. Transcriptome analysis of an apple (Malus× domestica) yellow fruit somatic mutation identifies a gene network module highly associated with anthocyanin and epigenetic regulation. J. Exp. Bot. 66, 7359–7376 (2015).
pubmed: 26417021
pmcid: 4765799
doi: 10.1093/jxb/erv433
Jacob, Y. et al. ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. Nat. Struct. Biol. 16, 763 (2009).
doi: 10.1038/nsmb.1611
Kuhn, N. et al. ABA influences color initiation timing in P. avium L. fruits by sequentially modulating the transcript levels of ABA and anthocyanin-related genes. Tree Genet. Genomes 17, 1–13 (2021).
doi: 10.1007/s11295-021-01502-1
San Martino, L., Manavella, F. A., García, D. A. & Salato, G. Phenology and fruit quality of nine sweet cherry cultivars in South Patagonia. Acta Hortic. 795, 841–848 (2005).
Sediqi, A. G., Kramchote, S., Itamura, H. & Esumi, T. Physiological changes in sweet cherry fruit in response to physical damage. Acta Hortic. 1235, 495–502 (2017).
Chavoshi, M. et al. Phenotyping protocol for sweet cherry (Prunus avium L.) to facilitate an understanding of trait inheritance. J. Am. Pomol. Soc. 68, 125–134 (2014).
Meisel, L. et al. A rapid and efficient method for high quality total RNA from peaches (Prunus persica) for functional genomics analyses. Biol. Res. 38, 83–88 (2005).
pubmed: 15977413
doi: 10.4067/S0716-97602005000100010
Shirasawa, K. et al. The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding. DNA Res. 24, 499–508 (2017).
pubmed: 28541388
pmcid: 5737369
doi: 10.1093/dnares/dsx020
Draper, N. R. & Smith, H. Applied Regression Analysis Vol. 326 (Wiley, Hoboken, 1998).
doi: 10.1002/9781118625590
Trapnell, C. et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc. 7, 562–578 (2012).
pubmed: 22383036
pmcid: 3334321
doi: 10.1038/nprot.2012.016
Conesa, A. & Götz, S. Blast2GO: A comprehensive suite for functional analysis in plant genomics. Int. J. Plant Genom. 2008, 619832 (2008).
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. Basic local alignment search tool. J. Mol. Biol. 215, 403–410 (1990).
pubmed: 2231712
doi: 10.1016/S0022-2836(05)80360-2
Hunter, S. et al. InterPro: the integrative protein signature database. Nucl. Ac. Res. 37(suppl_1), D211–D215 (2009).
Al-Shahrour, F., Díaz-Uriarte, R. & Dopazo, J. FatiGO: A web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics 20, 578–580 (2004).
pubmed: 14990455
doi: 10.1093/bioinformatics/btg455
Oliveros, J. C. An interactive tool for comparing lists with Venn Diagrams. http://bioinfogp.cnb.csic.es/tools/venny/index.html (2007).
Seo, M., Jikumaru, Y. & Kamiya, Y. Profiling of hormones and related metabolites in seed dormancy and germination studies. Seed Dormancy, Humana Press, 99–111 (2011).
Arapitsas, P., Perenzoni, D., Nicolini, G. & Mattivi, F. Study of sangiovese wines pigment profile by UHPLC-MS/MS. J. Agric. Food Chem. 60, 10461–10471 (2012).
pubmed: 23033811
doi: 10.1021/jf302617e
Di Rienzo, J. A. et al. (2012). InfoStat versión 2012. Grupo InfoStat, FCA. Argentina: Universidad Nacional de Córdoba.