Structural modeling of two plant UDP-dependent sugar-sugar glycosyltransferases reveals a conserved glutamic acid residue that is a hallmark for sugar acceptor recognition.

3D-protein structure models Rhamnosyl-transferase Specificity Sugar recognition Sugar-sugar glycosyltransferase

Journal

Journal of structural biology
ISSN: 1095-8657
Titre abrégé: J Struct Biol
Pays: United States
ID NLM: 9011206

Informations de publication

Date de publication:
09 2021
Historique:
received: 22 07 2019
revised: 29 06 2021
accepted: 04 08 2021
pubmed: 16 8 2021
medline: 5 4 2022
entrez: 15 8 2021
Statut: ppublish

Résumé

Glycosylation is one of the common modifications of plant metabolites, playing a major role in the chemical/biological diversity of a wide range of compounds. Plant metabolite glycosylation is catalyzed almost exclusively by glycosyltransferases, mainly by Uridine-diphosphate dependent Glycosyltransferases (UGTs). Several X-ray structures have been determined for primary glycosyltransferases, however, little is known regarding structure-function aspects of sugar-sugar/branch-forming O-linked UGTs (SBGTs) that catalyze the transfer of a sugar from the UDP-sugar donor to an acceptor sugar moiety of a previously glycosylated metabolite substrate. In this study we developed novel insights into the structural basis for SBGT catalytic activity by modelling the 3d-structures of two enzymes; a rhamnosyl-transferase Cs1,6RhaT - that catalyzes rhamnosylation of flavonoid-3-glucosides and flavonoid-7-glucosides and a UGT94D1 - that catalyzes glucosylation of (+)-Sesaminol 2-O-β-d-glucoside at the C6 of the primary sugar moiety. Based on these structural models and docking studies a glutamate (E290 or E268 in Cs1,6RhaT or UGT94D1, respectively) and a tryptophan (W28 or W15 in Cs1,6RhaT or UGT94D1, respectively) appear to interact with the sugar acceptor and are suggested to be important for the recognition of the sugar-moiety of the acceptor-substrate. Functional analysis of substitution mutants for the glutamate and tryptophan residues in Cs1,6RhaT further support their role in determining sugar-sugar/branch-forming GT specificity. Phylogenetic analysis of the UGT family in plants demonstrates that the glutamic-acid residue is a hallmark of SBGTs that is entirely absent from the corresponding position in primary UGTs.

Identifiants

pubmed: 34391905
pii: S1047-8477(21)00082-4
doi: 10.1016/j.jsb.2021.107777
pii:
doi:

Substances chimiques

Plant Proteins 0
Sugars 0
Glutamic Acid 3KX376GY7L
Uridine Diphosphate 58-98-0
Glycosyltransferases EC 2.4.-

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

107777

Informations de copyright

Copyright © 2021 Elsevier Inc. All rights reserved.

Auteurs

Wolfgang Brandt (W)

Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120 Halle (Saale), Germany. Electronic address: drwbra@gmail.com.

Eva Schulze (E)

Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120 Halle (Saale), Germany.

Raya Liberman-Aloni (R)

Institute of Plant Sciences, The Volcani Center, ARO, P.O. Box 6, Bet-Dagan, 50250, Israel.

Richard Bartelt (R)

Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120 Halle (Saale), Germany.

Silke Pienkny (S)

Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120 Halle (Saale), Germany.

Mira Carmeli-Weissberg (M)

Institute of Plant Sciences, The Volcani Center, ARO, P.O. Box 6, Bet-Dagan, 50250, Israel.

Ahuva Frydman (A)

Institute of Plant Sciences, The Volcani Center, ARO, P.O. Box 6, Bet-Dagan, 50250, Israel.

Yoram Eyal (Y)

Institute of Plant Sciences, The Volcani Center, ARO, P.O. Box 6, Bet-Dagan, 50250, Israel. Electronic address: eyalab@volcani.agri.gov.il.

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Classifications MeSH