Genomic analysis of a novel active prophage of Hafnia paralvei.
Journal
Archives of virology
ISSN: 1432-8798
Titre abrégé: Arch Virol
Pays: Austria
ID NLM: 7506870
Informations de publication
Date de publication:
Oct 2022
Oct 2022
Historique:
received:
14
11
2021
accepted:
20
04
2022
pubmed:
26
6
2022
medline:
27
8
2022
entrez:
25
6
2022
Statut:
ppublish
Résumé
Little is known about the prophages in Hafniaceae bacteria. A novel Hafnia phage, yong2, was induced from Hafnia paralvei by treatment with mitomycin C. The phage has an elliptical head with dimensions of approximately 45 × 38 nm and a long noncontractile tail of approximately 157 × 4 nm. The complete genome of Hafnia phage yong2 is a 39,546-bp double-stranded DNA with a G+C content of 49.9%, containing 59 open reading frames (ORFs) and having at least one fixed terminus (GGGGCAGCGACA). In phylogenetic analysis, Hafnia phage yong2 clustered with four predicted Hafnia prophages and one predicted Enterobacteriaceae prophage. These prophages and members of the family Drexlerviridae together formed two distinct subclades nested within a clade, suggesting the existence of a novel class of prophages with conserved sequences and a unique evolutionary status not yet studied before in Hafniaceae and Enterobacteriaceae bacteria.
Identifiants
pubmed: 35752683
doi: 10.1007/s00705-022-05498-4
pii: 10.1007/s00705-022-05498-4
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
2027-2034Subventions
Organisme : National key research and development program
ID : 2018YFA0903000
Organisme : Key laboratory of marine biogenetic resources of State Oceanic Administration
ID : HY201602
Informations de copyright
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.
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