Sala cibi gen. nov., sp. nov., an extremely halophilic archaeon isolated from solar salt.
Sala cibi
halophilic archaea
polyphasic taxonomy
solar salt
Journal
Journal of microbiology (Seoul, Korea)
ISSN: 1976-3794
Titre abrégé: J Microbiol
Pays: Korea (South)
ID NLM: 9703165
Informations de publication
Date de publication:
Sep 2022
Sep 2022
Historique:
received:
23
03
2022
accepted:
09
06
2022
revised:
02
06
2022
pubmed:
15
7
2022
medline:
27
8
2022
entrez:
14
7
2022
Statut:
ppublish
Résumé
Two novel halophilic archaeal strains, CBA1133
Identifiants
pubmed: 35835956
doi: 10.1007/s12275-022-2137-5
pii: 10.1007/s12275-022-2137-5
doi:
Substances chimiques
DNA, Archaeal
0
RNA, Ribosomal, 16S
0
Sodium Chloride
451W47IQ8X
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
899-904Informations de copyright
© 2022. Author(s).
Références
Auch, A.F., von Jan, M., Klenk, H.P., and Göker, M. 2010. Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand. Genomic. Sci. 2, 117–134.
doi: 10.4056/sigs.531120
Cantalapiedra, C.P., Hernández-Plaza, A., Letunic, I., Bork, P., and Huerta-Cepas, J. 2021. eggNOG-mapper v2: functional annotation, orthology assignments, and domain prediction at the metagenomic scale. Mol. Biol. Evol. 38, 5825–5829.
doi: 10.1093/molbev/msab293
Cui, H.L. and Dyall-Smith, M.L. 2021. Cultivation of halophilic archaea (class Halobacteria) from thalassohaline and athalassohaline environments. Mar. Life Sci. Technol. 3, 243–251.
doi: 10.1007/s42995-020-00087-3
Davis, J.J., Wattam, A.R., Aziz, R.K., Brettin, T., Butler, R., Butler, R.M., Chlenski, P., Conrad, N., Dickerman, A., Dietrich, E.M., et al. 2020. The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. Nucleic Acids Res. 48, D606–D612.
pubmed: 31667520
Dussault, H.P. 1955. An improved technique for staining red halophilic bacteria. J. Bacteriol. 70, 484–485.
doi: 10.1128/jb.70.4.484-485.1955
Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17, 368–376.
doi: 10.1007/BF01734359
González, C., Gutiérrez, C., and Ramirez, C. 1978. Halobacterium vallismortis sp. nov. An amylolytic and carbohydrate-metabolizing, extremely halophilic bacterium. Can. J. Microbiol. 24, 710–715.
doi: 10.1139/m78-119
Gupta, R.S., Naushad, S., and Baker, S. 2015. Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov. and Natrialbaceae fam. nov. Int. J. Syst. Evol. Microbiol. 65, 1050–1069.
doi: 10.1099/ijs.0.070136-0
Hou, J., Zhao, Y.J., Zhu, L., and Cui, H.L. 2018. Salinirubellus salinus gen. nov., sp. nov., isolated from a marine solar saltern. Int. J. Syst. Evol. Microbiol. 68, 1874–1878.
doi: 10.1099/ijsem.0.002757
Huerta-Cepas, J., Szklarczyk, D., Heller, D., Hernández-Plaza, A., Forslund, S.K., Cook, H., Mende, D.R., Letunic, I., Rattei, T., Jensen, L.J., et al. 2019. eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. Nucleic Acids Res. 47, D309–D314.
doi: 10.1093/nar/gky1085
Inoue, K., Itoh, T., Ohkuma, M., and Kogure, K. 2011. Halomarina oriensis gen. nov., sp. nov., a halophilic archaeon isolated from a seawater aquarium. Int. J. Syst. Evol. Microbiol. 61, 942–946.
doi: 10.1099/ijs.0.020677-0
Kim, Y.B., Kim, J.Y., Song, H.S., Lee, C., Ahn, S.W., Lee, S.H., Jung, M.Y., Rhee, J.K., Kim, J., Hyun, D.W., et al. 2018. Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size. Sci. Rep. 8, 7777.
doi: 10.1038/s41598-018-25887-7
Litchfield, C.D. 2011. Potential for industrial products from the halophilic Archaea. J. Ind. Microbiol. Biotechnol. 38, 1635–1647.
doi: 10.1007/s10295-011-1021-9
Minegishi, H., Echigo, A., Kuwahara, A., Shimane, Y., Kamekura, M., Itoh, T., Ohkuma, M., and Usami, R. 2015. Halocalculus aciditolerans gen. nov., sp. nov., an acid-tolerant haloarchaeon isolated from commercial salt. Int. J. Syst. Evol. Microbiol. 65, 1640–1645.
doi: 10.1099/ijs.0.000152
Minegishi, H. and Kamekura, M. 2018. Natronomonas. In Trujillo, M.E., Dedysh, S., DeVos, P., Hedlund, B., Kämpfer, P., Rainey, F.A., and Whitman, W.B. (eds.), Bergey’s Manual of Systematics of Archaea and Bacteria. John Wiley & Sons, Hoboken, New Jersey, USA.
Minnikin, D.E., O’donnell, A.G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A., and Parlett, J.H. 1984. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J. Microbiol. Methods 2, 233–241.
doi: 10.1016/0167-7012(84)90018-6
Oren, A., Ventosa, A., and Grant, W. 1997. Proposed minimal standards for description of new taxa in the order Halobacteriales. Int. J. Syst. Evol. Microbiol. 47, 233–238.
Oren, A., Ventosa, A., and Kamekura, M. 2017. Halobacteriaceae. In Trujillo, M.E., Dedysh, S., DeVos, P., Hedlund, B., Kämpfer, P., Rainey, F.A., and Whitman, W.B. (eds.), Bergey’s Manual of Systematics of Archaea and Bacteria. John Wiley & Sons, Hoboken, New Jersey, USA.
Rampelotto, P.H. 2013. Extremophiles and extreme environments. Life 3, 482–485.
doi: 10.3390/life3030482
Rodriguez-R, L.M. and Konstantinidis, K.T. 2014. Bypassing cultivation to identify bacterial species. Microbe 9, 111–118.
Rzhetsky, A. and Nei, M. 1992. A simple method for estimating and testing minimum-evolution trees. Mol. Biol. Evol. 9, 945–967.
Saitou, N. and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406–425.
pubmed: 3447015
Savage, K.N., Krumholz, L.R., Oren, A., and Elshahed, M.S. 2007. Haladaptatus paucihalophilus gen. nov., sp. nov., a halophilic archaeon isolated from a low-salt, sulfide-rich spring. Int. J. Syst. Evol. Microbiol. 57, 19–24.
doi: 10.1099/ijs.0.64464-0
Seemann, T. 2014. Prokka: rapid prokaryotic genome annotation. Bioinformatics 30, 2068–2069.
doi: 10.1093/bioinformatics/btu153
Smibert R.M. and Kreg, N.R. 1994. Phenotypic characterization. In Gerhardt, P., Murray, R.G.E., Wood, W.A., and Krieg, N.R. (eds.), Methods for General and Molecular Bacteriology, pp. 607–654. American Society for Microbiology, Washington DC, USA.
Tindall, B. 1990. Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol. Lett. 66, 199–202.
doi: 10.1111/j.1574-6968.1990.tb03996.x
Usami, R., Fukushima, T., Mizuki, T., Yoshida, Y., Inoue, A., and Horikoshi, K. 2005. Organic solvent tolerance of halophilic archaea, Haloarcula strains: effects of NaCl concentration on the tolerance and polar lipid composition. J. Biosci. Bioeng. 99, 169–174.
doi: 10.1263/jbb.99.169
Waditee-Sirisattha, R., Kageyama, H., and Takabe, T. 2016. Halophilic microorganism resources and their applications in industrial and environmental biotechnology. AIMS Microbiol. 2, 42–54.
doi: 10.3934/microbiol.2016.1.42
Yarza, P., Yilmaz, P., Pruesse, E., Glöckner, F.O., Ludwig, W., Schleifer, K.H., Whitman, W.B., Euzéby, J., Amann, R., and Rosselló-Móra, R. 2014. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nat. Rev. Microbiol. 12, 635–645.
doi: 10.1038/nrmicro3330
Yoon, S.H., Ha, S.M., Kwon, S., Lim, J., Kim, Y., Seo, H., and Chun, J. 2017. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int. J. Syst. Evol. Microbiol. 67, 1613–1617.
doi: 10.1099/ijsem.0.001755