Serratia silvae sp. nov., Isolated from Forest Soil.
Journal
Current microbiology
ISSN: 1432-0991
Titre abrégé: Curr Microbiol
Pays: United States
ID NLM: 7808448
Informations de publication
Date de publication:
24 Feb 2023
24 Feb 2023
Historique:
received:
16
12
2022
accepted:
06
02
2023
entrez:
24
2
2023
pubmed:
25
2
2023
medline:
3
3
2023
Statut:
epublish
Résumé
The Gram-negative, oxidase-negative, catalase-positive, rod-shaped strain Arafor3
Identifiants
pubmed: 36826511
doi: 10.1007/s00284-023-03214-2
pii: 10.1007/s00284-023-03214-2
doi:
Substances chimiques
Phospholipids
0
RNA, Ribosomal, 16S
0
DNA, Bacterial
0
Fatty Acids
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
114Informations de copyright
© 2023. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.
Références
Adeolu M, Alnajar S, Naushad S, Gupta RS (2016) Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov. Int J Syst Evol Microbiol 66:5575–5599
doi: 10.1099/ijsem.0.001485
pubmed: 27620848
Logan NA, Berge O, Bishop AH et al (2009) Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. Int J Syst Evol Microbiol 59:2114–2121. https://doi.org/10.1099/ijs.0.013649-0
doi: 10.1099/ijs.0.013649-0
pubmed: 19567583
Hennessy RC, Dichmann SI, Martens HJ et al (2020) Serratia inhibens sp. nov., a new antifungal species isolated from potato (Solanum tuberosum). Int J Syst Evol Microbiol 70:4204–4211
doi: 10.1099/ijsem.0.004270
pubmed: 32553053
Tian J-H, Pourcher A-M, Peu P (2016) Isolation of bacterial strains able to metabolize lignin and lignin-related compounds. Lett Appl Microbiol 63:30–37
doi: 10.1111/lam.12581
pubmed: 27125750
Kurz CL, Chauvet S, Andrès E et al (2003) Virulence factors of the human opportunistic pathogen Serratia marcescens identified by in vivo screening. EMBO J 22:1451–1460
doi: 10.1093/emboj/cdg159
pubmed: 12660152
pmcid: 152903
Elshaer MY (2019) Serratia plymuthica: a true pathogen in transplant patients. PAMJ Clin Med. https://doi.org/10.11604/pamj-cm.2019.1.57.20617
doi: 10.11604/pamj-cm.2019.1.57.20617
Gurevich A, Saveliev V, Vyahhi N, Tesler G (2013) QUAST: quality assessment tool for genome assemblies. Bioinformatics 29:1072–1075
doi: 10.1093/bioinformatics/btt086
pubmed: 23422339
pmcid: 3624806
Park KS, Ki C-S, Kang C-I et al (2012) Evaluation of the GenBank, EzTaxon, and BIBI services for molecular identification of clinical blood culture isolates that were unidentifiable or misidentified by conventional methods. J Clin Microbiol 50:1792–1795
doi: 10.1128/JCM.00081-12
pubmed: 22403421
pmcid: 3347139
Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512–526. https://doi.org/10.1093/oxfordjournals.molbev.a040023
doi: 10.1093/oxfordjournals.molbev.a040023
pubmed: 8336541
Kumar S, Stecher G, Li M et al (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35:1547–1549
doi: 10.1093/molbev/msy096
pubmed: 29722887
pmcid: 5967553
Son J-S, Hwang Y-J, Lee S-Y, Ghim S-Y (2021) Serratia rhizosphaerae sp. nov., a novel plant resistance inducer against soft rot disease in tobacco. Int J Syst Evol Microbiol 71:004788
doi: 10.1099/ijsem.0.004788
Stamatakis A (2015) Using RAxML to infer phylogenies. Curr Protoc Bioinform 51:6.14. 1-6.14. 14
doi: 10.1002/0471250953.bi0614s51
Yoon S-H, Ha S-M, Lim J et al (2017) A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie Van Leeuwenhoek 110:1281–1286
doi: 10.1007/s10482-017-0844-4
pubmed: 28204908
Lee I, Kim YO, Park S-C, Chun J (2016) OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol 66:1100–1103
doi: 10.1099/ijsem.0.000760
pubmed: 26585518
Aziz RK, Bartels D, Best AA et al (2008) The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:1–15
doi: 10.1186/1471-2164-9-75
Blin K, Shaw S, Steinke K et al (2019) AntiSMASH 5.0: updates to the secondary metabolite genome mining pipeline. Nucleic Acids Res 47:W81–W87
doi: 10.1093/nar/gkz310
pubmed: 31032519
pmcid: 6602434
King EO, Ward MK, Raney DE (1954) Two simple media for the demonstration of pyocyanin and fluorescin. J Lab Clin Med 44:301–307
pubmed: 13184240
Buck JD (1982) Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. Appl Environ Microbiol 44:992–993
doi: 10.1128/aem.44.4.992-993.1982
pubmed: 6184019
pmcid: 242128
Thompson JD, Gibson TJ, Higgins DG (2002) Multiple sequence alignment using ClustalW and ClustalX. Curr Protoc Bioinform Chapter 2:Unit 2 3. https://doi.org/10.1002/0471250953.bi0203s00
doi: 10.1002/0471250953.bi0203s00
Zhang C-W, Zhang J, Zhao J-J et al (2017) Serratia oryzae sp. nov., isolated from rice stems. Int J Syst Evol Microbiol 67:2928–2933
doi: 10.1099/ijsem.0.002049
pubmed: 28853686
Kämpfer P, Glaeser SP (2016) Serratia aquatilis sp. nov., isolated from drinking water systems. Int J Syst Evol Microbiol 66:407–413
doi: 10.1099/ijsem.0.000731
pubmed: 26537514
Cho G-S, Stein M, Brinks E et al (2020) Serratia nevei sp. nov. and Serratia bockelmannii sp. nov., isolated from fresh produce in Germany and reclassification of Serratia marcescens subsp. sakuensis Ajithkumar et al. 2003 as a later heterotypic synonym of Serratia marcescens subsp. marcescens. Syst Appl Microbiol 43:126055
doi: 10.1016/j.syapm.2020.126055
pubmed: 31992497
Wattam AR, Davis JJ, Assaf R et al (2017) Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center. Nucleic Acids Res 45:D535–D542
doi: 10.1093/nar/gkw1017
pubmed: 27899627