Identification and genetic diversity of grapevine virus L in Greece.

Greece / epidemiology Phylogeny Flexiviridae / genetics High-Throughput Nucleotide Sequencing Genetic Variation Vitis

Journal

Archives of virology
ISSN: 1432-8798
Titre abrégé: Arch Virol
Pays: Austria
ID NLM: 7506870

Informations de publication

Date de publication:
30 Mar 2023
Historique:
received: 30 11 2022
accepted: 06 03 2023
medline: 3 4 2023
entrez: 30 3 2023
pubmed: 31 3 2023
Statut: epublish

Résumé

In this study, grapevine virus L (GVL) was identified for the first time in Greece through the application of high-throughput sequencing of total RNA from grapevine samples. Further investigation of the prevalence of GVL in Greek vineyards by RT-PCR revealed its presence in 5.5% (31/560) of the tested samples, which originated from six viticultural areas of the country. Comparative sequence analysis based on the CP gene revealed a high degree of genetic variability among GVL isolates, while phylogenetic analysis grouped the Greek isolates in three of the five phylogroups formed, with most of them being classified in phylogroup I.

Identifiants

DOI: 10.1007/s00705-023-05756-z PMID: 36995397 PMC: PMC10063476
pubmed: 36995397
doi: 10.1007/s00705-023-05756-z
pii: 10.1007/s00705-023-05756-z
pmc: PMC10063476
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

127

Subventions

Organisme : General Secretariat for Research and Technology
ID : 2018ΣE01300000

Informations de copyright

© 2023. The Author(s).

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Auteurs

P Panailidou (P)

Laboratory of Plant Pathology, School of Agriculture, Faculty of Agriculture, Forestry and Natural Environment, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece.

A Galeou (A)

Laboratory of Virology, Scientific Directorate of Phytopathology, Benaki Phytopathological Institute, 8 St. Delta str., 14561, Kifissia, Greece.

D Beris (D)

Laboratory of Virology, Scientific Directorate of Phytopathology, Benaki Phytopathological Institute, 8 St. Delta str., 14561, Kifissia, Greece.

P Pappi (P)

Laboratory of Plant Virology, Department of Viticulture, Vegetable Crops, Floriculture and Plant Protection, Hellenic Agricultural Organization DIMITRA (ELGO-DIMITRA), Institute of Olive Tree, Subtropical Crops and Viticulture, Kastorias 32A, Mesa Katsampas, 71307, Heraklion, Crete, Greece.

I Theologidis (I)

Laboratory of Toxicological Control of Pesticides, Scientific Directorate of Pesticides' Control and Phytopharmacy, Benaki Phytopathological Institute, 8 St. Delta str., 14561, Kifissia, Greece.

E Tzagaki (E)

Laboratory of Plant Pathology, School of Agriculture, Faculty of Agriculture, Forestry and Natural Environment, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece.

L Lotos (L)

Laboratory of Plant Pathology, School of Agriculture, Faculty of Agriculture, Forestry and Natural Environment, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece.

C Varveri (C)

Laboratory of Virology, Scientific Directorate of Phytopathology, Benaki Phytopathological Institute, 8 St. Delta str., 14561, Kifissia, Greece.

N I Katis (NI)

Laboratory of Plant Pathology, School of Agriculture, Faculty of Agriculture, Forestry and Natural Environment, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece.

V I Maliogka (VI)

Laboratory of Plant Pathology, School of Agriculture, Faculty of Agriculture, Forestry and Natural Environment, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece. vmaliogk@agro.auth.gr.
ORCID: 0000-0001-5714-2710

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Classifications MeSH

questionsmedicales.fr › Régions géographiques › Europe › Grèce › Identification and genetic diversity of...
questionsmedicales.fr › Sciences de l'information › Phylogenèse › Identification and genetic diversity of...
questionsmedicales.fr › Virus › Virus à ARN › Virus à ARN à brin positif › Flexiviridae › Identification and genetic diversity of...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Séquençage nucléotidique à haut débit › Identification and genetic diversity of...
questionsmedicales.fr › Phénomènes génétiques › Variation génétique › Identification and genetic diversity of...
questionsmedicales.fr › Eucaryotes › Viridiplantae › Streptophyta › Embryophyta › Tracheobionta › Magnoliopsida › Vitaceae › Vitis › Identification and genetic diversity of...