Complete genome sequence of triticum yellow stripe virus, a new polerovirus infecting wheat (triticum aestivum) in China.
Journal
Archives of virology
ISSN: 1432-8798
Titre abrégé: Arch Virol
Pays: Austria
ID NLM: 7506870
Informations de publication
Date de publication:
21 Apr 2023
21 Apr 2023
Historique:
received:
04
01
2023
accepted:
13
03
2023
medline:
25
4
2023
pubmed:
21
4
2023
entrez:
21
04
2023
Statut:
epublish
Résumé
Wheat plants with yellow stripes on their leaves were collected in the city of Tai'an (Shandong province, China). High-throughput sequencing analysis of the collected plants showed that they were coinfected with wheat leaf yellowing-associated virus (WLYaV) and an unidentified polerovirus. The genome of the unidentified virus, tentatively named "triticum yellow stripe virus" (TriYSV), comprises 5,595 nucleotides and contains seven open reading frames (ORFs), with a typical polerovirus genome structure. Analysis by sequence alignment showed that TriYSV had the highest sequence similarity to wheat yellow dwarf virus (WYDV, a tentative member of the genus Polerovirus), with 87.3% nucleotide sequence identity over the whole genome. Except for P3a and the coat protein (CP), all of the proteins encoded by TriYSV showed < 90% amino acid identity to those of other poleroviruses. Phylogenetic analysis based on RNA-dependent RNA polymerase and CP amino acid sequences and complete genome nucleotide sequences showed that the poleroviruses WYDV, cereal yellow dwarf virus RPS (CYDV-RPS), CYDV-RPV, and barley yellow dwarf virus GPV are the most closely related to TriYSV. Thus, TriYSV is proposed to be a new member of the genus Polerovirus.
Identifiants
pubmed: 37083847
doi: 10.1007/s00705-023-05758-x
pii: 10.1007/s00705-023-05758-x
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
146Subventions
Organisme : Transformation and Application Special Project in Agricultural Scientific and Technological Achievements of Anhui Province
ID : 2022ZH003
Organisme : Natural Science Foundation of Anhui Province
ID : 1908085QC107
Organisme : Natural Science Foundation of Anhui Province
ID : 2008085MC74
Organisme : Hefei Postdoctoral Research Activities Foundation
ID : Hefei Postdoctoral Research Activities Foundation
Informations de copyright
© 2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.
Références
Bortolamiol D, Pazhouhandeh M, Marrocco K, Genschik P, Ziegler-Graff V (2007) The Polerovirus F box protein P0 targets ARGONAUTE1 to suppress RNA silencing. Curr biology: CB 17:1615–1621
doi: 10.1016/j.cub.2007.07.061
Brault V, Périgon S, Reinbold C, Erdinger M, Scheidecker D, Herrbach E, Richards K, Ziegler-Graff V (2005) The polerovirus minor capsid protein determines vector specificity and intestinal tropism in the aphid. J Virol 79:9685–9693
doi: 10.1128/JVI.79.15.9685-9693.2005
pubmed: 16014930
pmcid: 1181584
FAO F (2018) Food Outlook: biannual report on global food markets. FAO Rome
Fu S, Zhang T, He M, Sun B, Zhou X, Wu J (2021) Molecular characterization of a novel wheat-infecting virus of the family Betaflexiviridae. Arch Virol 166:2875–2879
doi: 10.1007/s00705-021-05175-y
pubmed: 34297223
Guo Lm, He J, Li J, Chen J-p, Zhang H-m (2019) Chinese wheat mosaic virus: A long-term threat to wheat in China. J Integr Agric 18:821–829
doi: 10.1016/S2095-3119(18)62047-7
Guo M, Yuan X, Wu N, Liu Y, Wang X (2022) Complete genome sequence of a novel wheat-infecting polerovirus associated with yellowing dwarf disease in China. Arch Virol 167:983–987
doi: 10.1007/s00705-022-05360-7
pubmed: 35112207
Han C, Li D, Xing Y, Zhu K, Tian Z, Cai Z, Yu J, Liu Y (2000) Wheat yellow mosaic virus Widely Occurring in Wheat (Triticum aestivum) in China. Plant Dis 84:627–630
doi: 10.1094/PDIS.2000.84.6.627
pubmed: 30841101
Knierim D, Tsai WS, Deng TC, Green SK, Kenyon L (2013) Full-length genome sequences of four polerovirus isolates infecting cucurbits in Taiwan determined from total RNA extracted from field samples. Plant patholgy 62:633–641
doi: 10.1111/j.1365-3059.2012.02653.x
Kumar S, Stecher G, Tamura K (2016) MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Mol Biol Evol 33:1870–1874
doi: 10.1093/molbev/msw054
pubmed: 27004904
pmcid: 8210823
Liu Y, Du Z, Wang H, Zhang S, Cao M, Wang X (2018) Identification and Characterization of Wheat Yellow Striate Virus, a Novel Leafhopper-Transmitted Nucleorhabdovirus Infecting Wheat. Front Microbiol 9:468
doi: 10.3389/fmicb.2018.00468
pubmed: 29593700
pmcid: 5861215
Liu Y, Khine MO, Zhang P, Fu Y, Wang X (2020) Incidence and Distribution of Insect-Transmitted Cereal Viruses in Wheat in China from 2007 to 2019. Plant Dis 104:1407–1414
doi: 10.1094/PDIS-11-19-2323-RE
pubmed: 32150505
Miller WA, Giedroc DP (2010) Ribosomal Frameshifting in Decoding Plant Viral RNAs. In: Atkins JF, Gesteland RF (eds) Recoding: Expansion of Decoding Rules Enriches Gene Expression. Springer New York, New York, NY, pp 193–220
doi: 10.1007/978-0-387-89382-2_9
Rotenberg D, Bockus WW, Whitfield AE, Hervey K, Baker KD, Ou Z, Laney AG, De Wolf ED, Appel JA (2016) Occurrence of Viruses and Associated Grain Yields of Paired Symptomatic and Nonsymptomatic Tillers in Kansas Winter Wheat Fields. Phytopathology 106:202–210
doi: 10.1094/PHYTO-04-15-0089-R
pubmed: 26799958
Sõmera M, Fargette D, Hébrard E, Sarmiento C, Ictv Report C (2021) ICTV Virus Taxonomy Profile: Solemoviridae 2021. J Gen Virol 102:001707
doi: 10.1099/jgv.0.001707
pubmed: 34951396
pmcid: 8744267
Tan S-T, Liu F, Lv J, Liu Q-L, Luo H-M, Xu Y, Ma Y, Chen X-J, Lan P-X, Chen H-R, Cao M-J, Li F (2021) Identification of two novel poleroviruses and the occurrence of Tobacco bushy top disease causal agents in natural plants. Sci Rep 11:21045
doi: 10.1038/s41598-021-99320-x
pubmed: 34702954
pmcid: 8548504
Zhang P, Liu Y, Liu W, Cao M, Massart S, Wang X (2017) Identification, Characterization and Full-Length Sequence Analysis of a Novel Polerovirus Associated with Wheat Leaf Yellowing Disease. Front Microbiol 8:1689
doi: 10.3389/fmicb.2017.01689
pubmed: 28932215
pmcid: 5592212
Zhou Y, Chen Z, Cheng M, Chen J, Zhu T, Wang R, Liu Y, Qi P, Chen G, Jiang Q, Wei Y, Luo MC, Nevo E, Allaby RG, Liu D, Wang J, Dvorák J, Zheng Y (2018) Uncovering the dispersion history, adaptive evolution and selection of wheat in China. Plant Biotechnol J 16:280–291
doi: 10.1111/pbi.12770
pubmed: 28635103