Comparative study on chloroplast genomes of three Hansenia forbesii varieties (Apiaceae).
Journal
PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081
Informations de publication
Date de publication:
2023
2023
Historique:
received:
19
02
2023
accepted:
18
05
2023
medline:
5
6
2023
pubmed:
1
6
2023
entrez:
1
6
2023
Statut:
epublish
Résumé
To find the gene hypervariable regions of three varieties of Hansenia forbesii H. Boissieu and determine their phylogenetic relationship, the chloroplast (cp) genome of these three varieties were firstly sequencing by the Illumina hiseq platform. In this study, we assembled the complete cp genome sequences of Hansenia forbesii LQ (156,954 bp), H. forbesii QX (157,181 bp), H. forbesii WQ (156,975 bp). They all contained 84 protein-coding genes, 37 tRNAs, and 8 rRNAs. The hypervariable regions between three cp genomes were atpF-atpH, petD, and rps15-ycf1. Phylogenetic analysis showed that H. forbesii LQ and H. forbesii WQ were closely related, followed by H. forbesii QX. This study showed that the three varieties of H. forbesii could be identified by the complete cp genome and specific DNA barcode (trnC-GCA-petN) and provided a new idea for germplasm identification of similar cultivated varieties.
Identifiants
pubmed: 37262084
doi: 10.1371/journal.pone.0286587
pii: PONE-D-23-04874
pmc: PMC10234559
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
e0286587Informations de copyright
Copyright: © 2023 Zhu et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Déclaration de conflit d'intérêts
We declare that there is no conflict of interest regarding the publication of this article.
Références
J Pharm Biomed Anal. 2011 Dec 15;56(5):1089-93
pubmed: 21856104
Plants (Basel). 2019 Oct 14;8(10):
pubmed: 31614980
Am J Bot. 2005 Jan;92(1):142-66
pubmed: 21652394
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
Bioinformatics. 2017 Aug 15;33(16):2583-2585
pubmed: 28398459
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
Front Plant Sci. 2022 Jun 24;13:882189
pubmed: 35812916
Mol Plant. 2020 Aug 3;13(8):1194-1202
pubmed: 32585190
Planta. 2021 Jun 28;254(1):14
pubmed: 34180013
PLoS One. 2023 Feb 9;18(2):e0277809
pubmed: 36757949
Front Plant Sci. 2022 Nov 21;13:1049209
pubmed: 36479523
Zhongguo Zhong Yao Za Zhi. 2007 Sep;32(18):1841-4
pubmed: 18051884
BMC Genomics. 2021 Feb 26;22(1):138
pubmed: 33637038
Sci Rep. 2018 Feb 2;8(1):2210
pubmed: 29396532
Front Plant Sci. 2023 Jan 06;13:1099856
pubmed: 36684764
Nucleic Acids Res. 2021 Sep 20;49(16):9077-9096
pubmed: 34417604
Sci Rep. 2022 Dec 15;12(1):21676
pubmed: 36522492
Front Plant Sci. 2022 Nov 24;13:1047592
pubmed: 36507423
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W273-9
pubmed: 15215394
Genome Biol. 2016 Jun 23;17(1):134
pubmed: 27339192
Bioinformatics. 2018 Sep 1;34(17):3030-3031
pubmed: 29659705
Proc Natl Acad Sci U S A. 2007 Apr 24;104(17):6879-80
pubmed: 17440039
Mol Ecol Resour. 2020 Jan;20(1):348-355
pubmed: 31599058
Genomics. 2020 Mar;112(2):1522-1530
pubmed: 31470082
Nature. 2019 Jan;565(7741):612-617
pubmed: 30651641
Nucleic Acids Res. 1999 Jan 15;27(2):573-80
pubmed: 9862982
Open Life Sci. 2022 Nov 23;17(1):1541-1554
pubmed: 36474705
Nucleic Acids Res. 2019 Jul 2;47(W1):W65-W73
pubmed: 31066451
Genomics. 2020 May;112(3):2349-2360
pubmed: 31945463
Mol Microbiol. 2000 Mar;35(6):1286-94
pubmed: 10760131
Gene. 2022 Jul 30;833:146572
pubmed: 35609799
Planta. 2021 Jul 08;254(2):27
pubmed: 34236509
Theor Appl Genet. 1989 Feb;77(2):212-6
pubmed: 24232531
Syst Biol. 2004 Feb;53(1):47-67
pubmed: 14965900
BMC Plant Biol. 2022 Dec 15;22(1):588
pubmed: 36522739
Nucleic Acids Res. 2019 Jul 2;47(W1):W59-W64
pubmed: 30949694
ACS Chem Biol. 2016 Jul 15;11(7):1964-72
pubmed: 27171654
Front Plant Sci. 2022 Nov 21;13:1036277
pubmed: 36479509
Sci Rep. 2022 Dec 14;12(1):21600
pubmed: 36517490
Mol Microbiol. 2003 Jun;48(6):1565-78
pubmed: 12791139
Annu Rev Genet. 1985;19:325-54
pubmed: 3936406
Nucleic Acids Res. 2001 Nov 15;29(22):4633-42
pubmed: 11713313
J Ethnopharmacol. 2017 Apr 18;202:241-255
pubmed: 28336469
Sci Rep. 2019 Feb 26;9(1):2773
pubmed: 30808961
Plants (Basel). 2019 Nov 06;8(11):
pubmed: 31698805