Frontiers and techniques in plant gene regulation.

Genes, Plant High-Throughput Nucleotide Sequencing Gene Expression Regulation, Plant / genetics Chromatin
Cis-regulatory elements DNA accessibility Massively parallel reporter assay Plant STARR-seq Plant gene regulation Single-cell sequencing Single-molecule chromatin assay

Journal

Current opinion in plant biology
ISSN: 1879-0356
Titre abrégé: Curr Opin Plant Biol
Pays: England
ID NLM: 100883395

Informations de publication

Date de publication:
10 2023
Historique:
received: 30 03 2023
revised: 12 05 2023
accepted: 19 05 2023
medline: 18 9 2023
pubmed: 19 6 2023
entrez: 18 6 2023
Statut: ppublish

Résumé

Understanding plant gene regulation has been a priority for generations of plant scientists. However, due to its complex nature, the regulatory code governing plant gene expression has yet to be deciphered comprehensively. Recently developed methods-often relying on next-generation sequencing technology and state-of-the-art computational approaches-have started to further our understanding of the gene regulatory logic used by plants. In this review, we discuss these methods and the insights into the regulatory code of plants that they can yield.

Identifiants

DOI: 10.1016/j.pbi.2023.102403 PMID: 37331209
pubmed: 37331209
pii: S1369-5266(23)00068-7
doi: 10.1016/j.pbi.2023.102403
pii:
doi:

Substances chimiques

Chromatin 0

Types de publication

Journal Article Review Research Support, U.S. Gov't, Non-P.H.S. Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

102403

Informations de copyright

Copyright © 2023 Elsevier Ltd. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Tobias Jores (T)

Department of Genome Sciences, University of Washington, Seattle, WA, USA. Electronic address: tobjores@uw.edu.

Morgan Hamm (M)

Department of Genome Sciences, University of Washington, Seattle, WA, USA.

Josh T Cuperus (JT)

Department of Genome Sciences, University of Washington, Seattle, WA, USA. Electronic address: cuperusj@uw.edu.

Christine Queitsch (C)

Department of Genome Sciences, University of Washington, Seattle, WA, USA. Electronic address: queitsch@uw.edu.

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Classifications MeSH

questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome végétal › Gènes de plante › Frontiers and techniques in plant gene regulation.
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Séquençage nucléotidique à haut débit › Frontiers and techniques in plant gene regulation.
questionsmedicales.fr › Phénomènes génétiques › Régulation de l'expression des gènes › Régulation de l'expression des gènes végétaux › Frontiers and techniques in plant gene regulation.
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Structures de chromosome › Chromatine › Frontiers and techniques in plant gene regulation.