Nonribosomal Peptide Synthetase Specific Genome Amplification Using Rolling Circle Amplification for Targeted Gene Sequencing.


Journal

International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791

Informations de publication

Date de publication:
07 May 2024
Historique:
received: 31 03 2024
revised: 02 05 2024
accepted: 03 05 2024
medline: 25 5 2024
pubmed: 25 5 2024
entrez: 25 5 2024
Statut: epublish

Résumé

Next-generation sequencing has transformed the acquisition of vast amounts of genomic information, including the rapid identification of target gene sequences in metagenomic databases. However, dominant species can sometimes hinder the detection of rare bacterial species. Therefore, a highly sensitive amplification technique that can selectively amplify bacterial genomes containing target genes of interest was developed in this study. The rolling circle amplification (RCA) method can initiate amplification from a single locus using a specific single primer to amplify a specific whole genome. A mixed cell suspension was prepared using

Identifiants

pubmed: 38791129
pii: ijms25105089
doi: 10.3390/ijms25105089
pii:
doi:

Substances chimiques

Peptide Synthases EC 6.3.2.-
non-ribosomal peptide synthase EC 6.3.2.-

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : JSPS KAKENHI
ID : 15K06583

Auteurs

Yoshiko Okamura (Y)

Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima 739-8530, Japan.
Graduate School of Advanced Science of Matter, Hiroshima University, Hiroshima 739-8530, Japan.

Masahiro Suemitsu (M)

Graduate School of Advanced Science of Matter, Hiroshima University, Hiroshima 739-8530, Japan.

Takato Ishikawa (T)

Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima 739-8530, Japan.

Hirokazu Takahashi (H)

Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima 739-8530, Japan.

Articles similaires

Genome, Chloroplast Phylogeny Genetic Markers Base Composition High-Throughput Nucleotide Sequencing
Coal Metagenome Phylogeny Bacteria Genome, Bacterial
Genome, Bacterial Virulence Phylogeny Genomics Plant Diseases

Classifications MeSH