Genome-wide survey of KT/HAK/KUP genes in the genus Citrullus and analysis of their involvement in K
Gene expression
K+ transport
Pangenome gene family
Watermelon
Journal
BMC genomics
ISSN: 1471-2164
Titre abrégé: BMC Genomics
Pays: England
ID NLM: 100965258
Informations de publication
Date de publication:
05 Sep 2024
05 Sep 2024
Historique:
received:
15
06
2024
accepted:
14
08
2024
medline:
6
9
2024
pubmed:
6
9
2024
entrez:
5
9
2024
Statut:
epublish
Résumé
The KT/HAK/KUP is the largest K 14 KT/HAK/KUP genes were identified in the genomes of each of seven Citrullus species. These KT/HAK/KUPs in watermelon were unevenly distributed across seven chromosomes. Segmental duplication is the primary driving force behind the expansion of the KT/HAK/KUP family, subjected to purifying selection during domestication (Ka/Ks < 1), and all KT/HAK/KUPs exhibit conserved motifs and could be phylogenetically classified into four groups. The promoters of KT/HAK/KUPs contain numerous cis-regulatory elements related to plant growth and development, phytohormone response, and stress response. Under K KT/HAK/KUP genes in watermelon were systematically identified and analyzed at the pangenome level and provide a foundation for understanding the classification and functions of the KT/HAK/KUPs in watermelon plants.
Sections du résumé
BACKGROUND
BACKGROUND
The KT/HAK/KUP is the largest K
RESULTS
RESULTS
14 KT/HAK/KUP genes were identified in the genomes of each of seven Citrullus species. These KT/HAK/KUPs in watermelon were unevenly distributed across seven chromosomes. Segmental duplication is the primary driving force behind the expansion of the KT/HAK/KUP family, subjected to purifying selection during domestication (Ka/Ks < 1), and all KT/HAK/KUPs exhibit conserved motifs and could be phylogenetically classified into four groups. The promoters of KT/HAK/KUPs contain numerous cis-regulatory elements related to plant growth and development, phytohormone response, and stress response. Under K
CONCLUSIONS
CONCLUSIONS
KT/HAK/KUP genes in watermelon were systematically identified and analyzed at the pangenome level and provide a foundation for understanding the classification and functions of the KT/HAK/KUPs in watermelon plants.
Identifiants
pubmed: 39237905
doi: 10.1186/s12864-024-10712-5
pii: 10.1186/s12864-024-10712-5
doi:
Substances chimiques
Plant Proteins
0
Potassium
RWP5GA015D
Cation Transport Proteins
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
836Subventions
Organisme : Huai'an Natural Science Research Project
ID : HABL202228
Organisme : Seed Industry Vitalization Research Projects of Jiangsu Province
ID : JBGS[2021]072
Organisme : China Agriculture Research System of MOF and MARA
ID : CARS-25
Informations de copyright
© 2024. The Author(s).
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