Phylogenomic and synteny analysis of BAHD and SCP/SCPL gene families reveal their evolutionary histories in plant specialized metabolism.


Journal

Philosophical transactions of the Royal Society of London. Series B, Biological sciences
ISSN: 1471-2970
Titre abrégé: Philos Trans R Soc Lond B Biol Sci
Pays: England
ID NLM: 7503623

Informations de publication

Date de publication:
18 Nov 2024
Historique:
medline: 30 9 2024
pubmed: 30 9 2024
entrez: 29 9 2024
Statut: ppublish

Résumé

Plant chemical diversity is largely owing to a number of enzymes which catalyse reactions involved in the assembly, and in the subsequent chemical modifications, of the core structures of major classes of plant specialized metabolites. One such reaction is acylation. With this in mind, to study the deep evolutionary history of BAHD and the serine-carboxypeptidase-like (SCPL) acyltransferase genes, we assembled phylogenomic synteny networks based on a large-scale inference analysis of orthologues across whole-genome sequences of 126 species spanning Stramenopiles and Archaeplastida, including

Identifiants

pubmed: 39343028
doi: 10.1098/rstb.2023.0349
doi:

Substances chimiques

Carboxypeptidases EC 3.4.-
serine carboxypeptidase EC 3.4.16.5
Plant Proteins 0
Acyltransferases EC 2.3.-

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

20230349

Auteurs

Thomas Naake (T)

European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
European Molecular Biology Laboratory (EMBL), Hamburg, Germany.

John C D'Auria (JC)

Leibniz Institute of Crop Plant Genetics and Crop Plant Research (IPK) OT Gatersleben, Seeland, Germany.

Alisdair R Fernie (AR)

Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.

Federico Scossa (F)

Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
Council for Agricultural Research and Economics, Research Center for Genomics and Bioinformatics, Rome, Italy.

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Classifications MeSH