Bert Poolman

Affiliations

Department of Biochemistry, Groningen Biochemistry & Biotechnology Institute, University of Groningen, Groningen 9747 AB, The Netherlands.

Publications (33)

Stereoselective Protection-Free Modification of 3-Keto-saccharides.

Organic letters

Avec: Nittert Marinus , Nabil Tahiri , Margherita Duca , L M C Marc Mouthaan , Simona Bianca , Marco van den Noort , Bert Poolman , Martin D Witte , Adriaan J Minnaard

Extracellular loops matter - subcellular location and function of the lysine transporter Lyp1 from Saccharomyces cerevisiae.

The FEBS journal

Avec: Joury S Van't Klooster , Frans Bianchi , Ruben B Doorn , Mirco Lorenzon , Jarnick H Lusseveld , Christiaan M Punter , Bert Poolman

Flexible and Extended Linker Domains Support Efficient Targeting of Heh2 to the Inner Nuclear Membrane.

Structure (London, England : 1993)

Avec: Irina L Rempel , Petra Popken , Ali Ghavami , Ankur Mishra , Rizqiya A Hapsari , Anouk H G Wolters , Annemiek C Veldsink , Marindy Klaassens , Anne C Meinema , Bert Poolman , Ben N G Giepmans , Patrick R Onck , Anton Steen , Liesbeth M Veenhoff

Energy coupling of membrane transport and efficiency of sucrose dissimilation in yeast.

Metabolic engineering

Avec: Ryan K Henderson , Sophie C de Valk , Bert Poolman , Robert Mans

Membrane thickness, lipid phase and sterol type are determining factors in the permeability of membranes to small solutes.

Nature communications

Avec: Jacopo Frallicciardi , Josef Melcr , Pareskevi Siginou , Siewert J Marrink , Bert Poolman

Construction of Out-of-Equilibrium Metabolic Networks in Nano- and Micrometer-Sized Vesicles.

Journal of visualized experiments : JoVE

Avec: Jelmer Coenradij , Eleonora Bailoni , Bert Poolman

Determining small-molecule permeation through lipid membranes.

Nature protocols

Avec: Jacopo Frallicciardi , Matteo Gabba , Bert Poolman

Minimal Out-of-Equilibrium Metabolism for Synthetic Cells: A Membrane Perspective.

ACS synthetic biology

Avec: Eleonora Bailoni , Michele Partipilo , Jelmer Coenradij , Douwe A J Grundel , Dirk J Slotboom , Bert Poolman

Simulation-based Reconstructed Diffusion unveils the effect of aging on protein diffusion in Escherichia coli.

PLoS computational biology

Avec: Luca Mantovanelli , Dmitrii S Linnik , Michiel Punter , Hildeberto Jardón Kojakhmetov , Wojciech M Śmigiel , Bert Poolman

Bacterial cell volume regulation and the importance of cyclic di-AMP.

Microbiology and molecular biology reviews : MMBR

Avec: Alexander J Foster , Marco van den Noort , Bert Poolman

Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength.

BMC evolutionary biology

Avec: Claire E Price , Filipe Branco Dos Santos , Anne Hesseling , Jaakko J Uusitalo , Herwig Bachmann , Vera Benavente , Anisha Goel , Jan Berkhout , Frank J Bruggeman , Siewert-Jan Marrink , Manolo Montalban-Lopez , Anne de Jong , Jan Kok , Douwe Molenaar , Bert Poolman , Bas Teusink , Oscar P Kuipers

Coupling efficiency of secondary active transporters.

Current opinion in biotechnology

Avec: Ryan K Henderson , Klaus Fendler , Bert Poolman

Physiochemical Modeling of Vesicle Dynamics upon Osmotic Upshift.

Biophysical journal

Avec: Matteo Gabba , Bert Poolman

A Trifunctional Linker for Palmitoylation and Peptide and Protein Localization in Biological Membranes.

Chembiochem : a European journal of chemical biology

Avec: Łukasz Syga , Reinder H de Vries , Hugo van Oosterhout , Rianne Bartelds , Arnold J Boersma , Gerard Roelfes , Bert Poolman

Chemogenetic Tags with Probe Exchange for Live-Cell Fluorescence Microscopy.

ACS chemical biology

Avec: Aditya Iyer , Maxim Baranov , Alexander J Foster , Shreyans Chordia , Gerard Roelfes , Rifka Vlijm , Geert van den Bogaart , Bert Poolman

Physicochemical considerations for bottom-up synthetic biology.

Emerging topics in life sciences

Avec: Wojciech Mikołaj Śmigiel , Pauline Lefrançois , Bert Poolman

Probing the stability and interdomain interactions in the ABC transporter OpuA using single-molecule optical tweezers.

Cell reports

Avec: Lyan van der Sleen , Jan A Stevens , Siewert J Marrink , Bert Poolman , Kasia Tych

Exploring the Ligand Binding and Conformational Dynamics of the Substrate-Binding Domain 1 of the ABC Transporter GlnPQ.

The journal of physical chemistry. B

Avec: Mariia Nemchinova , Gea K Schuurman-Wolters , Jacob J Whittaker , Valentina Arkhipova , Siewert J Marrink , Bert Poolman , Albert Guskov

Gating by ionic strength and safety check by cyclic-di-AMP in the ABC transporter OpuA.

Science advances

Avec: Hendrik R Sikkema , Marco van den Noort , Jan Rheinberger , Marijn de Boer , Sabrina T Krepel , Gea K Schuurman-Wolters , Cristina Paulino , Bert Poolman

Structural and biophysical characterization of the tandem substrate-binding domains of the ABC importer GlnPQ.

Open biology

Avec: Evelyn Ploetz , Gea K Schuurman-Wolters , Niels Zijlstra , Amarins W Jager , Douglas A Griffith , Albert Guskov , Giorgos Gouridis , Bert Poolman , Thorben Cordes

Measurement of Protein Mobility in

Frontiers in microbiology

Avec: Buu Minh Tran , Haritha Prabha , Aditya Iyer , Conor O'Byrne , Tjakko Abee , Bert Poolman

Regulation of Amino Acid Transport in Saccharomyces cerevisiae.

Microbiology and molecular biology reviews : MMBR

Avec: Frans Bianchi , Joury S Van't Klooster , Stephanie J Ruiz , Bert Poolman

Weak Acid Permeation in Synthetic Lipid Vesicles and Across the Yeast Plasma Membrane.

Biophysical journal

Avec: Matteo Gabba , Jacopo Frallicciardi , Joury van 't Klooster , Ryan Henderson , Łukasz Syga , Robert Mans , Antonius J A van Maris , Bert Poolman

Periprotein lipidomes of

eLife

Avec: Joury S van 't Klooster , Tan-Yun Cheng , Hendrik R Sikkema , Aike Jeucken , Branch Moody , Bert Poolman

Heterodimer Formation of the Homodimeric ABC Transporter OpuA.

International journal of molecular sciences

Avec: Patricia Alvarez-Sieiro , Hendrik R Sikkema , Bert Poolman

Fluorescence-based sensing of the bioenergetic and physicochemical status of the cell.

Current topics in membranes

Avec: Luca Mantovanelli , Bauke F Gaastra , Bert Poolman

ATP Recycling Fuels Sustainable Glycerol 3-Phosphate Formation in Synthetic Cells Fed by Dynamic Dialysis.

ACS synthetic biology

Avec: Eleonora Bailoni , Bert Poolman

Natamycin sequesters ergosterol and interferes with substrate transport by the lysine transporter Lyp1 from yeast.

Biochimica et biophysica acta. Biomembranes

Avec: Maria Szomek , Peter Reinholdt , Hanna-Loisa Walther , Holger A Scheidt , Peter Müller , Sebastian Obermaier , Bert Poolman , Jacob Kongsted , Daniel Wüstner

Dynamic structure of E. coli cytoplasm: supramolecular complexes and cell aging impact spatial distribution and mobility of proteins.

Communications biology

Avec: Dmitrii Linnik , Ivan Maslov , Christiaan Michiel Punter , Bert Poolman

Protein diffusion in

Science advances

Avec: Wojciech M Śmigiel , Luca Mantovanelli , Dmitrii S Linnik , Michiel Punter , Jakob Silberberg , Limin Xiang , Ke Xu , Bert Poolman

Super-resolving microscopy reveals the localizations and movement dynamics of stressosome proteins in Listeria monocytogenes.

Communications biology

Avec: Buu Minh Tran , Dmitrii Sergeevich Linnik , Christiaan Michiel Punter , Wojciech Mikołaj Śmigiel , Luca Mantovanelli , Aditya Iyer , Conor O'Byrne , Tjakko Abee , Jörgen Johansson , Bert Poolman

Synthetic Vesicles for Sustainable Energy Recycling and Delivery of Building Blocks for Lipid Biosynthesis

ACS synthetic biology

Avec: Eleonora Bailoni , Miyer F Patiño-Ruiz , Andreea R Stan , Gea K Schuurman-Wolters , Marten Exterkate , Arnold J M Driessen , Bert Poolman

Membrane Lipid Requirements of the Lysine Transporter Lyp1 from Saccharomyces cerevisiae.

Journal of molecular biology

Avec: Joury S van 't Klooster , Tan-Yun Cheng , Hendrik R Sikkema , Aike Jeucken , D Branch Moody , Bert Poolman

Réseau de co-auteurs

Eleonora Bailoni 4 collaborations

Luca Mantovanelli 4 collaborations

Gea K Schuurman-Wolters 4 collaborations

Hendrik R Sikkema 4 collaborations

Marco van den Noort 3 collaborations

Jacopo Frallicciardi 3 collaborations

Siewert J Marrink 3 collaborations

Matteo Gabba 3 collaborations

Aditya Iyer 3 collaborations

Joury S Van't Klooster 2 collaborations

Frans Bianchi 2 collaborations

Ryan K Henderson 2 collaborations

Robert Mans 2 collaborations

Jelmer Coenradij 2 collaborations

Dmitrii S Linnik 2 collaborations

Michiel Punter 2 collaborations

Wojciech M Śmigiel 2 collaborations

Alexander J Foster 2 collaborations

Łukasz Syga 2 collaborations

Gerard Roelfes 2 collaborations

Wojciech Mikołaj Śmigiel 2 collaborations

Albert Guskov 2 collaborations

Buu Minh Tran 2 collaborations

Conor O'Byrne 2 collaborations

Tjakko Abee 2 collaborations

Joury S van 't Klooster 2 collaborations

Tan-Yun Cheng 2 collaborations

Aike Jeucken 2 collaborations

Christiaan Michiel Punter 2 collaborations

Nittert Marinus 1 collaboration

Nabil Tahiri 1 collaboration

Margherita Duca 1 collaboration

L M C Marc Mouthaan 1 collaboration

Simona Bianca 1 collaboration

Martin D Witte 1 collaboration

Adriaan J Minnaard 1 collaboration

Ruben B Doorn 1 collaboration

Mirco Lorenzon 1 collaboration

Jarnick H Lusseveld 1 collaboration

Christiaan M Punter 1 collaboration

Irina L Rempel 1 collaboration

Petra Popken 1 collaboration

Ali Ghavami 1 collaboration

Ankur Mishra 1 collaboration

Rizqiya A Hapsari 1 collaboration

Anouk H G Wolters 1 collaboration

Annemiek C Veldsink 1 collaboration

Marindy Klaassens 1 collaboration

Anne C Meinema 1 collaboration

Ben N G Giepmans 1 collaboration

Patrick R Onck 1 collaboration

Anton Steen 1 collaboration

Liesbeth M Veenhoff 1 collaboration

Sophie C de Valk 1 collaboration

Josef Melcr 1 collaboration

Pareskevi Siginou 1 collaboration

Michele Partipilo 1 collaboration

Douwe A J Grundel 1 collaboration

Dirk J Slotboom 1 collaboration

Hildeberto Jardón Kojakhmetov 1 collaboration

Claire E Price 1 collaboration

Filipe Branco Dos Santos 1 collaboration

Anne Hesseling 1 collaboration

Jaakko J Uusitalo 1 collaboration

Herwig Bachmann 1 collaboration

Vera Benavente 1 collaboration

Anisha Goel 1 collaboration

Jan Berkhout 1 collaboration

Frank J Bruggeman 1 collaboration

Siewert-Jan Marrink 1 collaboration

Manolo Montalban-Lopez 1 collaboration

Anne de Jong 1 collaboration

Jan Kok 1 collaboration

Douwe Molenaar 1 collaboration

Bas Teusink 1 collaboration

Oscar P Kuipers 1 collaboration

Klaus Fendler 1 collaboration

Reinder H de Vries 1 collaboration

Hugo van Oosterhout 1 collaboration

Rianne Bartelds 1 collaboration

Arnold J Boersma 1 collaboration

Maxim Baranov 1 collaboration

Shreyans Chordia 1 collaboration

Rifka Vlijm 1 collaboration

Geert van den Bogaart 1 collaboration

Pauline Lefrançois 1 collaboration

Lyan van der Sleen 1 collaboration

Jan A Stevens 1 collaboration

Kasia Tych 1 collaboration

Mariia Nemchinova 1 collaboration

Jacob J Whittaker 1 collaboration

Valentina Arkhipova 1 collaboration

Jan Rheinberger 1 collaboration

Marijn de Boer 1 collaboration

Sabrina T Krepel 1 collaboration

Cristina Paulino 1 collaboration

Evelyn Ploetz 1 collaboration

Niels Zijlstra 1 collaboration

Amarins W Jager 1 collaboration

Douglas A Griffith 1 collaboration

Giorgos Gouridis 1 collaboration

Thorben Cordes 1 collaboration

Haritha Prabha 1 collaboration

Stephanie J Ruiz 1 collaboration

Joury van 't Klooster 1 collaboration

Ryan Henderson 1 collaboration

Antonius J A van Maris 1 collaboration

Branch Moody 1 collaboration

Patricia Alvarez-Sieiro 1 collaboration

Bauke F Gaastra 1 collaboration

Maria Szomek 1 collaboration

Peter Reinholdt 1 collaboration

Hanna-Loisa Walther 1 collaboration

Holger A Scheidt 1 collaboration

Peter Müller 1 collaboration

Sebastian Obermaier 1 collaboration

Jacob Kongsted 1 collaboration

Daniel Wüstner 1 collaboration

Dmitrii Linnik 1 collaboration

Ivan Maslov 1 collaboration

Jakob Silberberg 1 collaboration

Limin Xiang 1 collaboration

Ke Xu 1 collaboration

Dmitrii Sergeevich Linnik 1 collaboration

Jörgen Johansson 1 collaboration

Miyer F Patiño-Ruiz 1 collaboration

Andreea R Stan 1 collaboration

Marten Exterkate 1 collaboration

Arnold J M Driessen 1 collaboration

D Branch Moody 1 collaboration