David Croll

Affiliations

Swiss Tropical and Public Health Institute, Basel, Switzerland.
University of Basel, Basel, Switzerland.

Publications (29)

Chromosomal assembly and analyses of genome-wide recombination rates in the forest pathogenic fungus Armillaria ostoyae.

Heredity

Avec: Renate Heinzelmann , Daniel Rigling , György Sipos , Martin Münsterkötter , Daniel Croll

A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici.

BMC biology

Avec: Thomas Badet , Ursula Oggenfuss , Leen Abraham , Bruce A McDonald , Daniel Croll

Population-level deep sequencing reveals the interplay of clonal and sexual reproduction in the fungal wheat pathogen

Microbial genomics

Avec: Nikhil Kumar Singh , Petteri Karisto , Daniel Croll

Tackling microbial threats in agriculture with integrative imaging and computational approaches.

Computational and structural biotechnology journal

Avec: Nikhil Kumar Singh , Anik Dutta , Guido Puccetti , Daniel Croll

Cryptic genetic structure and copy-number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum.

Environmental microbiology

Avec: Benjamin Dauphin , Maíra de Freitas Pereira , Annegret Kohler , Igor V Grigoriev , Kerrie Barry , Hyunsoo Na , Mojgan Amirebrahimi , Anna Lipzen , Francis Martin , Martina Peter , Daniel Croll

Transcriptome-wide SNPs for Botrychium lunaria ferns enable fine-grained analysis of ploidy and population structure.

Molecular ecology resources

Avec: Vinciane Mossion , Benjamin Dauphin , Jason Grant , Michael Kessler , Niklaus Zemp , Daniel Croll

Unraveling coevolutionary dynamics using ecological genomics.

Trends in genetics : TIG

Avec: Cornille Amandine , Dieter Ebert , Eva Stukenbrock , Ricardo C Rodríguez de la Vega , Peter Tiffin , Daniel Croll , Aurélien Tellier

A systematic screen for co-option of transposable elements across the fungal kingdom.

Mobile DNA

Avec: Ursula Oggenfuss , Thomas Badet , Daniel Croll

A pangenome-guided manually curated library of transposable elements for Zymoseptoria tritici.

BMC research notes

Avec: Tobias Baril , Daniel Croll

Copy number variation introduced by a massive mobile element facilitates global thermal adaptation in a fungal wheat pathogen.

Nature communications

Avec: Sabina Moser Tralamazza , Emile Gluck-Thaler , Alice Feurtey , Daniel Croll

Maintenance of variation in virulence and reproduction in populations of an agricultural plant pathogen.

Evolutionary applications

Avec: Anik Dutta , Daniel Croll , Bruce A McDonald , Luke G Barrett

Rapid sequence evolution driven by transposable elements at a virulence locus in a fungal wheat pathogen.

BMC genomics

Avec: Nikhil Kumar Singh , Thomas Badet , Leen Abraham , Daniel Croll

Mapping the adaptive landscape of a major agricultural pathogen reveals evolutionary constraints across heterogeneous environments.

The ISME journal

Avec: Anik Dutta , Fanny E Hartmann , Carolina Sardinha Francisco , Bruce A McDonald , Daniel Croll

Clinical evaluation for morbidity associated with soil-transmitted helminth infection in school-age children on Pemba Island, Tanzania.

PLoS neglected tropical diseases

Avec: Isaac I Bogoch , Benjamin Speich , Nathan C Lo , Wendelin Moser , David Croll , Said M Ali , Shaali M Ame , Jürg Utzinger , Jason R Andrews , Jennifer Keiser

Cautionary Notes on Use of the MoT3 Diagnostic Assay for Magnaporthe oryzae Wheat and Rice Blast Isolates.

Phytopathology

Avec: Dipali Rani Gupta , Claudia Sarai Reyes Avila , Joe Win , Darren M Soanes , Lauren S Ryder , Daniel Croll , Pallab Bhattacharjee , Md Shaid Hossain , Nur Uddin Mahmud , Md Shabab Mehebub , Musrat Zahan Surovy , Md Mahbubur Rahman , Nicholas J Talbot , Sophien Kamoun , M Tofazzal Islam

Natural selection drives population divergence for local adaptation in a wheat pathogen.

Fungal genetics and biology : FG & B

Avec: Danilo Pereira , Daniel Croll , Patrick C Brunner , Bruce A McDonald

A Chromosome-Scale Genome Assembly for the

G3 (Bethesda, Md.)

Avec: Like Fokkens , Li Guo , Susanne Dora , Bo Wang , Kai Ye , Clara Sánchez-Rodríguez , Daniel Croll

Purging of highly deleterious mutations through severe bottlenecks in Alpine ibex.

Nature communications

Avec: Christine Grossen , Frédéric Guillaume , Lukas F Keller , Daniel Croll

Soil composition and plant genotype determine benzoxazinoid-mediated plant-soil feedbacks in cereals.

Plant, cell & environment

Avec: Selma Cadot , Valentin Gfeller , Lingfei Hu , Nikhil Singh , Andrea Sánchez-Vallet , Gaétan Glauser , Daniel Croll , Matthias Erb , Marcel G A van der Heijden , Klaus Schlaeppi

Temporal changes in pathogen diversity in a perennial plant-pathogen-hyperparasite system.

Molecular ecology

Avec: Lea Stauber , Daniel Croll , Simone Prospero

Genomic surveillance uncovers a pandemic clonal lineage of the wheat blast fungus.

PLoS biology

Avec: Sergio M Latorre , Vincent M Were , Andrew J Foster , Thorsten Langner , Angus Malmgren , Adeline Harant , Soichiro Asuke , Sarai Reyes-Avila , Dipali Rani Gupta , Cassandra Jensen , Weibin Ma , Nur Uddin Mahmud , Md Shåbab Mehebub , Rabson M Mulenga , Abu Naim Md Muzahid , Sanjoy Kumar Paul , S M Fajle Rabby , Abdullah Al Mahbub Rahat , Lauren Ryder , Ram-Krishna Shrestha , Suwilanji Sichilima , Darren M Soanes , Pawan Kumar Singh , Alison R Bentley , Diane G O Saunders , Yukio Tosa , Daniel Croll , Kurt H Lamour , Tofazzal Islam , Batiseba Tembo , Joe Win , Nicholas J Talbot , Hernán A Burbano , Sophien Kamoun

Recent transposable element bursts are associated with the proximity to genes in a fungal plant pathogen.

PLoS pathogens

Avec: Ursula Oggenfuss , Daniel Croll

Stress-Driven Transposable Element De-repression Dynamics and Virulence Evolution in a Fungal Pathogen.

Molecular biology and evolution

Avec: Simone Fouché , Thomas Badet , Ursula Oggenfuss , Clémence Plissonneau , Carolina Sardinha Francisco , Daniel Croll

The emergence of the multi-species NIP1 effector in Rhynchosporium was accompanied by high rates of gene duplications and losses.

Environmental microbiology

Avec: Norfarhan Mohd-Assaad , Bruce A McDonald , Daniel Croll

Studies in mycology

Avec: P W Crous , L Lombard , M Sandoval-Denis , K A Seifert , H-J Schroers , P Chaverri , J Gené , J Guarro , Y Hirooka , K Bensch , G H J Kema , S C Lamprecht , L Cai , A Y Rossman , M Stadler , R C Summerbell , J W Taylor , S Ploch , C M Visagie , N Yilmaz , J C Frisvad , A M Abdel-Azeem , J Abdollahzadeh , A Abdolrasouli , A Akulov , J F Alberts , J P M Araújo , H A Ariyawansa , M Bakhshi , M Bendiksby , A Ben Hadj Amor , J D P Bezerra , T Boekhout , M P S Câmara , M Carbia , G Cardinali , R F Castañeda-Ruiz , A Celis , V Chaturvedi , J Collemare , D Croll , U Damm , C A Decock , R P de Vries , C N Ezekiel , X L Fan , N B Fernández , E Gaya , C D González , D Gramaje , J Z Groenewald , M Grube , M Guevara-Suarez , V K Gupta , V Guarnaccia , A Haddaji , F Hagen , D Haelewaters , K Hansen , A Hashimoto , M Hernández-Restrepo , J Houbraken , V Hubka , K D Hyde , T Iturriaga , R Jeewon , P R Johnston , Ž Jurjević , I Karalti , L Korsten , E E Kuramae , I Kušan , R Labuda , D P Lawrence , H B Lee , C Lechat , H Y Li , Y A Litovka , S S N Maharachchikumbura , Y Marin-Felix , B Matio Kemkuignou , N Matočec , A R McTaggart , P Mlčoch , L Mugnai , C Nakashima , R H Nilsson , S R Noumeur , I N Pavlov , M P Peralta , A J L Phillips , J I Pitt , G Polizzi , W Quaedvlieg , K C Rajeshkumar , S Restrepo , A Rhaiem , J Robert , V Robert , A M Rodrigues , C Salgado-Salazar , R A Samson , A C S Santos , R G Shivas , C M Souza-Motta , G Y Sun , W J Swart , S Szoke , Y P Tan , J E Taylor , P W J Taylor , P V Tiago , K Z Váczy , N van de Wiele , N A van der Merwe , G J M Verkley , W A S Vieira , A Vizzini , B S Weir , N N Wijayawardene , J W Xia , M J Yáñez-Morales , A Yurkov , J C Zamora , R Zare , C L Zhang , M Thines

High-quality genome assembly of Pseudocercospora ulei the main threat to natural rubber trees.

Genetics and molecular biology

Avec: Sandra González-Sayer , Ursula Oggenfuss , Ibonne García , Fabio Aristizabal , Daniel Croll , Diego M Riaño-Pachon

Variability in an effector gene promoter of a necrotrophic fungal pathogen dictates epistasis and effector-triggered susceptibility in wheat.

PLoS pathogens

Avec: Evan John , Silke Jacques , Huyen T T Phan , Lifang Liu , Danilo Pereira , Daniel Croll , Karam B Singh , Richard P Oliver , Kar-Chun Tan

Emergence and diversification of a highly invasive chestnut pathogen lineage across southeastern Europe.

eLife

Avec: Lea Stauber , Thomas Badet , Alice Feurtey , Simone Prospero , Daniel Croll

Organic acids and glucose prime late-stage fungal biotrophy in maize.

Science (New York, N.Y.)

Avec: Matthias Kretschmer , Djihane Damoo , Sherry Sun , Christopher W J Lee , Daniel Croll , Harry Brumer , James Kronstad

Réseau de co-auteurs

Daniel Croll 27 collaborations

Thomas Badet 5 collaborations

Ursula Oggenfuss 5 collaborations

Bruce A McDonald 5 collaborations

Nikhil Kumar Singh 3 collaborations

Anik Dutta 3 collaborations

Leen Abraham 2 collaborations

Benjamin Dauphin 2 collaborations

Alice Feurtey 2 collaborations

Carolina Sardinha Francisco 2 collaborations

Dipali Rani Gupta 2 collaborations

Joe Win 2 collaborations

Darren M Soanes 2 collaborations

Nur Uddin Mahmud 2 collaborations

Nicholas J Talbot 2 collaborations

Sophien Kamoun 2 collaborations

Danilo Pereira 2 collaborations

Lea Stauber 2 collaborations

Simone Prospero 2 collaborations

Renate Heinzelmann 1 collaboration

Daniel Rigling 1 collaboration

György Sipos 1 collaboration

Martin Münsterkötter 1 collaboration

Petteri Karisto 1 collaboration

Guido Puccetti 1 collaboration

Maíra de Freitas Pereira 1 collaboration

Annegret Kohler 1 collaboration

Igor V Grigoriev 1 collaboration

Kerrie Barry 1 collaboration

Hyunsoo Na 1 collaboration

Mojgan Amirebrahimi 1 collaboration

Anna Lipzen 1 collaboration

Francis Martin 1 collaboration

Martina Peter 1 collaboration

Vinciane Mossion 1 collaboration

Jason Grant 1 collaboration

Michael Kessler 1 collaboration

Niklaus Zemp 1 collaboration

Cornille Amandine 1 collaboration

Dieter Ebert 1 collaboration

Eva Stukenbrock 1 collaboration

Ricardo C Rodríguez de la Vega 1 collaboration

Peter Tiffin 1 collaboration

Aurélien Tellier 1 collaboration

Tobias Baril 1 collaboration

Sabina Moser Tralamazza 1 collaboration

Emile Gluck-Thaler 1 collaboration

Luke G Barrett 1 collaboration

Fanny E Hartmann 1 collaboration

Isaac I Bogoch 1 collaboration

Benjamin Speich 1 collaboration

Nathan C Lo 1 collaboration

Wendelin Moser 1 collaboration

Said M Ali 1 collaboration

Shaali M Ame 1 collaboration

Jürg Utzinger 1 collaboration

Jason R Andrews 1 collaboration

Jennifer Keiser 1 collaboration

Claudia Sarai Reyes Avila 1 collaboration

Lauren S Ryder 1 collaboration

Pallab Bhattacharjee 1 collaboration

Md Shaid Hossain 1 collaboration

Md Shabab Mehebub 1 collaboration

Musrat Zahan Surovy 1 collaboration

Md Mahbubur Rahman 1 collaboration

M Tofazzal Islam 1 collaboration

Patrick C Brunner 1 collaboration

Like Fokkens 1 collaboration

Li Guo 1 collaboration

Susanne Dora 1 collaboration

Bo Wang 1 collaboration

Kai Ye 1 collaboration

Clara Sánchez-Rodríguez 1 collaboration

Christine Grossen 1 collaboration

Frédéric Guillaume 1 collaboration

Lukas F Keller 1 collaboration

Selma Cadot 1 collaboration

Valentin Gfeller 1 collaboration

Lingfei Hu 1 collaboration

Nikhil Singh 1 collaboration

Andrea Sánchez-Vallet 1 collaboration

Gaétan Glauser 1 collaboration

Matthias Erb 1 collaboration

Marcel G A van der Heijden 1 collaboration

Klaus Schlaeppi 1 collaboration

Sergio M Latorre 1 collaboration

Vincent M Were 1 collaboration

Andrew J Foster 1 collaboration

Thorsten Langner 1 collaboration

Angus Malmgren 1 collaboration

Adeline Harant 1 collaboration

Soichiro Asuke 1 collaboration

Sarai Reyes-Avila 1 collaboration

Cassandra Jensen 1 collaboration

Weibin Ma 1 collaboration

Md Shåbab Mehebub 1 collaboration

Rabson M Mulenga 1 collaboration

Abu Naim Md Muzahid 1 collaboration

Sanjoy Kumar Paul 1 collaboration

S M Fajle Rabby 1 collaboration

Abdullah Al Mahbub Rahat 1 collaboration

Lauren Ryder 1 collaboration

Ram-Krishna Shrestha 1 collaboration

Suwilanji Sichilima 1 collaboration

Pawan Kumar Singh 1 collaboration

Alison R Bentley 1 collaboration

Diane G O Saunders 1 collaboration

Yukio Tosa 1 collaboration

Kurt H Lamour 1 collaboration

Tofazzal Islam 1 collaboration

Batiseba Tembo 1 collaboration

Hernán A Burbano 1 collaboration

Simone Fouché 1 collaboration

Clémence Plissonneau 1 collaboration

Norfarhan Mohd-Assaad 1 collaboration

P W Crous 1 collaboration

L Lombard 1 collaboration

M Sandoval-Denis 1 collaboration

K A Seifert 1 collaboration

H-J Schroers 1 collaboration

P Chaverri 1 collaboration

J Gené 1 collaboration

J Guarro 1 collaboration

Y Hirooka 1 collaboration

K Bensch 1 collaboration

G H J Kema 1 collaboration

S C Lamprecht 1 collaboration

L Cai 1 collaboration

A Y Rossman 1 collaboration

M Stadler 1 collaboration

R C Summerbell 1 collaboration

J W Taylor 1 collaboration

S Ploch 1 collaboration

C M Visagie 1 collaboration

N Yilmaz 1 collaboration

J C Frisvad 1 collaboration

A M Abdel-Azeem 1 collaboration

J Abdollahzadeh 1 collaboration

A Abdolrasouli 1 collaboration

A Akulov 1 collaboration

J F Alberts 1 collaboration

J P M Araújo 1 collaboration

H A Ariyawansa 1 collaboration

M Bakhshi 1 collaboration

M Bendiksby 1 collaboration

A Ben Hadj Amor 1 collaboration

J D P Bezerra 1 collaboration

T Boekhout 1 collaboration

M P S Câmara 1 collaboration

M Carbia 1 collaboration

G Cardinali 1 collaboration

R F Castañeda-Ruiz 1 collaboration

A Celis 1 collaboration

V Chaturvedi 1 collaboration

J Collemare 1 collaboration

D Croll 1 collaboration

U Damm 1 collaboration

C A Decock 1 collaboration

R P de Vries 1 collaboration

C N Ezekiel 1 collaboration

X L Fan 1 collaboration

N B Fernández 1 collaboration

E Gaya 1 collaboration

C D González 1 collaboration

D Gramaje 1 collaboration

J Z Groenewald 1 collaboration

M Grube 1 collaboration

M Guevara-Suarez 1 collaboration

V K Gupta 1 collaboration

V Guarnaccia 1 collaboration

A Haddaji 1 collaboration

F Hagen 1 collaboration

D Haelewaters 1 collaboration

K Hansen 1 collaboration

A Hashimoto 1 collaboration

M Hernández-Restrepo 1 collaboration

J Houbraken 1 collaboration

V Hubka 1 collaboration

K D Hyde 1 collaboration

T Iturriaga 1 collaboration

R Jeewon 1 collaboration

P R Johnston 1 collaboration

Ž Jurjević 1 collaboration

I Karalti 1 collaboration

L Korsten 1 collaboration

E E Kuramae 1 collaboration

I Kušan 1 collaboration

R Labuda 1 collaboration

D P Lawrence 1 collaboration

H B Lee 1 collaboration

C Lechat 1 collaboration

H Y Li 1 collaboration

Y A Litovka 1 collaboration

S S N Maharachchikumbura 1 collaboration

Y Marin-Felix 1 collaboration

B Matio Kemkuignou 1 collaboration

N Matočec 1 collaboration

A R McTaggart 1 collaboration

P Mlčoch 1 collaboration

L Mugnai 1 collaboration

C Nakashima 1 collaboration

R H Nilsson 1 collaboration

S R Noumeur 1 collaboration

I N Pavlov 1 collaboration

M P Peralta 1 collaboration

A J L Phillips 1 collaboration

J I Pitt 1 collaboration

G Polizzi 1 collaboration

W Quaedvlieg 1 collaboration

K C Rajeshkumar 1 collaboration

S Restrepo 1 collaboration

A Rhaiem 1 collaboration

J Robert 1 collaboration

V Robert 1 collaboration

A M Rodrigues 1 collaboration

C Salgado-Salazar 1 collaboration

R A Samson 1 collaboration

A C S Santos 1 collaboration

R G Shivas 1 collaboration

C M Souza-Motta 1 collaboration

G Y Sun 1 collaboration

W J Swart 1 collaboration

S Szoke 1 collaboration

Y P Tan 1 collaboration

J E Taylor 1 collaboration

P W J Taylor 1 collaboration

P V Tiago 1 collaboration

K Z Váczy 1 collaboration

N van de Wiele 1 collaboration

N A van der Merwe 1 collaboration

G J M Verkley 1 collaboration

W A S Vieira 1 collaboration

A Vizzini 1 collaboration

B S Weir 1 collaboration

N N Wijayawardene 1 collaboration

J W Xia 1 collaboration

M J Yáñez-Morales 1 collaboration

A Yurkov 1 collaboration

J C Zamora 1 collaboration

R Zare 1 collaboration

C L Zhang 1 collaboration

M Thines 1 collaboration

Sandra González-Sayer 1 collaboration

Ibonne García 1 collaboration

Fabio Aristizabal 1 collaboration

Diego M Riaño-Pachon 1 collaboration

Evan John 1 collaboration

Silke Jacques 1 collaboration

Huyen T T Phan 1 collaboration

Lifang Liu 1 collaboration

Karam B Singh 1 collaboration

Richard P Oliver 1 collaboration

Kar-Chun Tan 1 collaboration

Matthias Kretschmer 1 collaboration

Djihane Damoo 1 collaboration

Sherry Sun 1 collaboration

Christopher W J Lee 1 collaboration

Harry Brumer 1 collaboration

James Kronstad 1 collaboration