Ksenia Skvortsova

Affiliations

Epigenetics Research Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, 384 Victoria St, Sydney, NSW 2010, Australia; Developmental Epigenomics Laboratory, Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, NSW 2010, Australia.

Publications (10)

DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns.

Cancer cell

Avec: Ksenia Skvortsova , Etienne Masle-Farquhar , Phuc-Loi Luu , Jenny Z Song , Wenjia Qu , Elena Zotenko , Cathryn M Gould , Qian Du , Timothy J Peters , Yolanda Colino-Sanguino , Ruth Pidsley , Shalima S Nair , Amanda Khoury , Grady C Smith , Lisa A Miosge , Joanne H Reed , James G Kench , Mark A Rubin , Lisa Horvath , Ozren Bogdanovic , Sue Mei Lim , Jose M Polo , Christopher C Goodnow , Clare Stirzaker , Susan J Clark

Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome.

BMC genomics

Avec: Richard J Edwards , Matt A Field , James M Ferguson , Olga Dudchenko , Jens Keilwagen , Benjamin D Rosen , Gary S Johnson , Edward S Rice , La Deanna Hillier , Jillian M Hammond , Samuel G Towarnicki , Arina Omer , Ruqayya Khan , Ksenia Skvortsova , Ozren Bogdanovic , Robert A Zammit , Erez Lieberman Aiden , Wesley C Warren , J William O Ballard

Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C.

GigaScience

Avec: Matt A Field , Benjamin D Rosen , Olga Dudchenko , Eva K F Chan , Andre E Minoche , Richard J Edwards , Kirston Barton , Ruth J Lyons , Daniel Enosi Tuipulotu , Vanessa M Hayes , Arina D Omer , Zane Colaric , Jens Keilwagen , Ksenia Skvortsova , Ozren Bogdanovic , Martin A Smith , Erez Lieberman Aiden , Timothy P L Smith , Robert A Zammit , J William O Ballard

STAT3 gain-of-function mutations connect leukemia with autoimmune disease by pathological NKG2D

Immunity

Avec: Etienne Masle-Farquhar , Katherine J L Jackson , Timothy J Peters , Ghamdan Al-Eryani , Mandeep Singh , Kathryn J Payne , Geetha Rao , Danielle T Avery , Gabrielle Apps , Jennifer Kingham , Christopher J Jara , Ksenia Skvortsova , Alexander Swarbrick , Cindy S Ma , Daniel Suan , Gulbu Uzel , Ignatius Chua , Jennifer W Leiding , Kaarina Heiskanen , Kahn Preece , Leena Kainulainen , Michael O'Sullivan , Megan A Cooper , Mikko R J Seppänen , Satu Mustjoki , Shannon Brothers , Tiphanie P Vogel , Robert Brink , Stuart G Tangye , Joanne H Reed , Christopher C Goodnow

The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology.

GigaScience

Avec: J William O Ballard , Matt A Field , Richard J Edwards , Laura A B Wilson , Loukas G Koungoulos , Benjamin D Rosen , Barry Chernoff , Olga Dudchenko , Arina Omer , Jens Keilwagen , Ksenia Skvortsova , Ozren Bogdanovic , Eva Chan , Robert Zammit , Vanessa Hayes , Erez Lieberman Aiden

The Australasian dingo archetype:

bioRxiv : the preprint server for biology

Avec: J William O Ballard , Matt A Field , Richard J Edwards , Laura A B Wilson , Loukas G Koungoulos , Benjamin D Rosen , Barry Chernoff , Olga Dudchenko , Arina Omer , Jens Keilwagen , Ksenia Skvortsova , Ozren Bogdanovic , Eva Chan , Robert Zammit , Vanessa Hayes , Erez Lieberman Aiden

The little skate genome and the evolutionary emergence of wing-like fins.

Nature

Avec: Ferdinand Marlétaz , Elisa de la Calle-Mustienes , Rafael D Acemel , Christina Paliou , Silvia Naranjo , Pedro Manuel Martínez-García , Ildefonso Cases , Victoria A Sleight , Christine Hirschberger , Marina Marcet-Houben , Dina Navon , Ali Andrescavage , Ksenia Skvortsova , Paul Edward Duckett , Álvaro González-Rajal , Ozren Bogdanovic , Johan H Gibcus , Liyan Yang , Lourdes Gallardo-Fuentes , Ismael Sospedra , Javier Lopez-Rios , Fabrice Darbellay , Axel Visel , Job Dekker , Neil Shubin , Toni Gabaldón , Tetsuya Nakamura , Juan J Tena , Darío G Lupiáñez , Daniel S Rokhsar , José Luis Gómez-Skarmeta

The DNA methylation landscape in cancer.

Essays in biochemistry

Avec: Ksenia Skvortsova , Clare Stirzaker , Phillippa Taberlay

Retention of paternal DNA methylome in the developing zebrafish germline.

Nature communications

Avec: Ksenia Skvortsova , Katsiaryna Tarbashevich , Martin Stehling , Ryan Lister , Manuel Irimia , Erez Raz , Ozren Bogdanovic

Integrated epigenomic analysis stratifies chromatin remodellers into distinct functional groups.

Epigenetics & chromatin

Avec: Katherine A Giles , Cathryn M Gould , Qian Du , Ksenia Skvortsova , Jenny Z Song , Madhavi P Maddugoda , Joanna Achinger-Kawecka , Clare Stirzaker , Susan J Clark , Phillippa C Taberlay

Réseau de co-auteurs

Ozren Bogdanovic 7 collaborations

Richard J Edwards 4 collaborations

Matt A Field 4 collaborations

Olga Dudchenko 4 collaborations

Jens Keilwagen 4 collaborations

Benjamin D Rosen 4 collaborations

Erez Lieberman Aiden 4 collaborations

J William O Ballard 4 collaborations

Clare Stirzaker 3 collaborations

Arina Omer 3 collaborations

Etienne Masle-Farquhar 2 collaborations

Jenny Z Song 2 collaborations

Cathryn M Gould 2 collaborations

Qian Du 2 collaborations

Timothy J Peters 2 collaborations

Joanne H Reed 2 collaborations

Christopher C Goodnow 2 collaborations

Susan J Clark 2 collaborations

Robert A Zammit 2 collaborations

Laura A B Wilson 2 collaborations

Loukas G Koungoulos 2 collaborations

Barry Chernoff 2 collaborations

Eva Chan 2 collaborations

Robert Zammit 2 collaborations

Vanessa Hayes 2 collaborations

Phuc-Loi Luu 1 collaboration

Wenjia Qu 1 collaboration

Elena Zotenko 1 collaboration

Yolanda Colino-Sanguino 1 collaboration

Ruth Pidsley 1 collaboration

Shalima S Nair 1 collaboration

Amanda Khoury 1 collaboration

Grady C Smith 1 collaboration

Lisa A Miosge 1 collaboration

James G Kench 1 collaboration

Mark A Rubin 1 collaboration

Lisa Horvath 1 collaboration

Sue Mei Lim 1 collaboration

Jose M Polo 1 collaboration

James M Ferguson 1 collaboration

Gary S Johnson 1 collaboration

Edward S Rice 1 collaboration

La Deanna Hillier 1 collaboration

Jillian M Hammond 1 collaboration

Samuel G Towarnicki 1 collaboration

Ruqayya Khan 1 collaboration

Wesley C Warren 1 collaboration

Eva K F Chan 1 collaboration

Andre E Minoche 1 collaboration

Kirston Barton 1 collaboration

Ruth J Lyons 1 collaboration

Daniel Enosi Tuipulotu 1 collaboration

Vanessa M Hayes 1 collaboration

Arina D Omer 1 collaboration

Zane Colaric 1 collaboration

Martin A Smith 1 collaboration

Timothy P L Smith 1 collaboration

Katherine J L Jackson 1 collaboration

Ghamdan Al-Eryani 1 collaboration

Mandeep Singh 1 collaboration

Kathryn J Payne 1 collaboration

Geetha Rao 1 collaboration

Danielle T Avery 1 collaboration

Gabrielle Apps 1 collaboration

Jennifer Kingham 1 collaboration

Christopher J Jara 1 collaboration

Alexander Swarbrick 1 collaboration

Cindy S Ma 1 collaboration

Daniel Suan 1 collaboration

Gulbu Uzel 1 collaboration

Ignatius Chua 1 collaboration

Jennifer W Leiding 1 collaboration

Kaarina Heiskanen 1 collaboration

Kahn Preece 1 collaboration

Leena Kainulainen 1 collaboration

Michael O'Sullivan 1 collaboration

Megan A Cooper 1 collaboration

Mikko R J Seppänen 1 collaboration

Satu Mustjoki 1 collaboration

Shannon Brothers 1 collaboration

Tiphanie P Vogel 1 collaboration

Robert Brink 1 collaboration

Stuart G Tangye 1 collaboration

Ferdinand Marlétaz 1 collaboration

Elisa de la Calle-Mustienes 1 collaboration

Rafael D Acemel 1 collaboration

Christina Paliou 1 collaboration

Silvia Naranjo 1 collaboration

Pedro Manuel Martínez-García 1 collaboration

Ildefonso Cases 1 collaboration

Victoria A Sleight 1 collaboration

Christine Hirschberger 1 collaboration

Marina Marcet-Houben 1 collaboration

Dina Navon 1 collaboration

Ali Andrescavage 1 collaboration

Paul Edward Duckett 1 collaboration

Álvaro González-Rajal 1 collaboration

Johan H Gibcus 1 collaboration

Liyan Yang 1 collaboration

Lourdes Gallardo-Fuentes 1 collaboration

Ismael Sospedra 1 collaboration

Javier Lopez-Rios 1 collaboration

Fabrice Darbellay 1 collaboration

Axel Visel 1 collaboration

Job Dekker 1 collaboration

Neil Shubin 1 collaboration

Toni Gabaldón 1 collaboration

Tetsuya Nakamura 1 collaboration

Juan J Tena 1 collaboration

Darío G Lupiáñez 1 collaboration

Daniel S Rokhsar 1 collaboration

José Luis Gómez-Skarmeta 1 collaboration

Phillippa Taberlay 1 collaboration

Katsiaryna Tarbashevich 1 collaboration

Martin Stehling 1 collaboration

Ryan Lister 1 collaboration

Manuel Irimia 1 collaboration

Erez Raz 1 collaboration

Katherine A Giles 1 collaboration

Madhavi P Maddugoda 1 collaboration

Joanna Achinger-Kawecka 1 collaboration

Phillippa C Taberlay 1 collaboration