Gaucher disease: single gene molecular characterization of one-hundred Indian patients reveals novel variants and the most prevalent mutation.


Journal

BMC medical genetics
ISSN: 1471-2350
Titre abrégé: BMC Med Genet
Pays: England
ID NLM: 100968552

Informations de publication

Date de publication:
14 02 2019
Historique:
received: 29 10 2018
accepted: 22 01 2019
entrez: 16 2 2019
pubmed: 16 2 2019
medline: 21 8 2019
Statut: epublish

Résumé

Gaucher disease is a rare pan-ethnic, lysosomal storage disorder resulting due to beta-Glucosidase (GBA1) gene defect. This leads to the glucocerebrosidase enzyme deficiency and an increased accumulation of undegraded glycolipid glucocerebroside inside the cells' lysosomes. To date, nearly 460 mutations have been described in the GBA1 gene. With the aim to determine mutations spectrum and molecular pathology of Gaucher disease in India, the present study investigated one hundred unrelated patients (age range: 1 day to 31 years) having splenomegaly, with or without hepatomegaly, cytopenia and bone abnormality in some of the patients. The biochemical investigation for the plasma chitotriosidase enzyme activity and β-Glucosidase enzyme activity confirmed the Gaucher disease. The mutations were identified by screening the patients' whole GBA gene coding region using bidirectional Sanger sequencing. The biochemical analysis revealed a significant reduction in the β-Glucosidase activity in all patients. Sanger sequencing established 71 patients with homozygous mutation and 22 patients with compound heterozygous mutation in GBA1 gene. Lack of identification of mutations in three patients suggests the possibility of either large deletion/duplication or deep intronic variations in the GBA1 gene. In four cases, where the proband died due to confirmed Gaucher disease, the parents were found to be a carrier. Overall, the study identified 33 mutations in 100 patients that also covers four missense mutations (p.Ser136Leu, p.Leu279Val, p.Gly383Asp, p.Gly399Arg) not previously reported in Gaucher disease patients. The mutation p.Leu483Pro was identified as the most commonly occurring Gaucher disease mutation in the study (62% patients). The second common mutations identified were p.Arg535Cys (7% patients) and RecNcil (7% patients). Another complex mutation Complex C was identified in a compound heterozygous status (3% patients). The homology modeling of the novel mutations suggested the destabilization of the GBA protein structure due to conformational changes. The study reports four novel and 29 known mutations identified in the GBA1 gene in one-hundred Gaucher patients. The given study establishes p.Leu483Pro as the most prevalent mutation in the Indian patients with type 1 Gaucher disease that provide new insight into the molecular basis of Gaucher Disease in India.

Sections du résumé

BACKGROUND
Gaucher disease is a rare pan-ethnic, lysosomal storage disorder resulting due to beta-Glucosidase (GBA1) gene defect. This leads to the glucocerebrosidase enzyme deficiency and an increased accumulation of undegraded glycolipid glucocerebroside inside the cells' lysosomes. To date, nearly 460 mutations have been described in the GBA1 gene. With the aim to determine mutations spectrum and molecular pathology of Gaucher disease in India, the present study investigated one hundred unrelated patients (age range: 1 day to 31 years) having splenomegaly, with or without hepatomegaly, cytopenia and bone abnormality in some of the patients.
METHODS
The biochemical investigation for the plasma chitotriosidase enzyme activity and β-Glucosidase enzyme activity confirmed the Gaucher disease. The mutations were identified by screening the patients' whole GBA gene coding region using bidirectional Sanger sequencing.
RESULTS
The biochemical analysis revealed a significant reduction in the β-Glucosidase activity in all patients. Sanger sequencing established 71 patients with homozygous mutation and 22 patients with compound heterozygous mutation in GBA1 gene. Lack of identification of mutations in three patients suggests the possibility of either large deletion/duplication or deep intronic variations in the GBA1 gene. In four cases, where the proband died due to confirmed Gaucher disease, the parents were found to be a carrier. Overall, the study identified 33 mutations in 100 patients that also covers four missense mutations (p.Ser136Leu, p.Leu279Val, p.Gly383Asp, p.Gly399Arg) not previously reported in Gaucher disease patients. The mutation p.Leu483Pro was identified as the most commonly occurring Gaucher disease mutation in the study (62% patients). The second common mutations identified were p.Arg535Cys (7% patients) and RecNcil (7% patients). Another complex mutation Complex C was identified in a compound heterozygous status (3% patients). The homology modeling of the novel mutations suggested the destabilization of the GBA protein structure due to conformational changes.
CONCLUSIONS
The study reports four novel and 29 known mutations identified in the GBA1 gene in one-hundred Gaucher patients. The given study establishes p.Leu483Pro as the most prevalent mutation in the Indian patients with type 1 Gaucher disease that provide new insight into the molecular basis of Gaucher Disease in India.

Identifiants

pubmed: 30764785
doi: 10.1186/s12881-019-0759-1
pii: 10.1186/s12881-019-0759-1
pmc: PMC6376752
doi:

Substances chimiques

GBA protein, human EC 3.2.1.45
Glucosylceramidase EC 3.2.1.45

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Pagination

31

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Auteurs

Jayesh Sheth (J)

FRIGE's Institute of Human Genetics, FRIGE House, Jodhpur Gam Road, Satellite, Ahmedabad, Gujarat, 380015, India. jshethad1@gmail.com.

Riddhi Bhavsar (R)

FRIGE's Institute of Human Genetics, FRIGE House, Jodhpur Gam Road, Satellite, Ahmedabad, Gujarat, 380015, India.

Mehul Mistri (M)

FRIGE's Institute of Human Genetics, FRIGE House, Jodhpur Gam Road, Satellite, Ahmedabad, Gujarat, 380015, India.

Dhairya Pancholi (D)

FRIGE's Institute of Human Genetics, FRIGE House, Jodhpur Gam Road, Satellite, Ahmedabad, Gujarat, 380015, India.

Ashish Bavdekar (A)

King Edward Memorial Hospital, Pune, 411011, India.

Ashwin Dalal (A)

Centre for DNA Fingerprinting and Diagnostics, Hyderabad, 500039, India.

Prajnya Ranganath (P)

Centre for DNA Fingerprinting and Diagnostics, Hyderabad, 500039, India.

Katta M Girisha (KM)

Kasturba Medical College, Tiger Cir Rd, Madhav Nagar, Manipal, 576104, Karnataka, India.

Anju Shukla (A)

Kasturba Medical College, Tiger Cir Rd, Madhav Nagar, Manipal, 576104, Karnataka, India.

Shubha Phadke (S)

Sanjay Gandhi Postgraduate Institute of Medical Sciences, Lucknow, 226014, India.

Ratna Puri (R)

Sir Ganga Ram Hospital, New Delhi, 110060, India.

Inusha Panigrahi (I)

The Postgraduate Institute of Medical Education and Research, Chandigarh, 160012, India.

Anupriya Kaur (A)

The Postgraduate Institute of Medical Education and Research, Chandigarh, 160012, India.

Mamta Muranjan (M)

King Edward Memorial Hospital, Mumbai, 400012, India.

Manisha Goyal (M)

J.K. Lone Mother and Child Hospital, Jaipur, 302004, India.

Radha Ramadevi (R)

Rainbow Children's Hospital, Telangana, 500034, India.

Raju Shah (R)

Ankur Institute of Child Health, Ahmedabad, 380009, India.

Sheela Nampoothiri (S)

Amrita Institute of Medical Sciences & Research Centre, Cochin, 682041, India.

Sumita Danda (S)

Christian Medical College & Hospital, Vellore, 632004, India.

Chaitanya Datar (C)

Sahyadri Medical Genetics & Tissue Engineering Facility, Pune, 411038, India.

Seema Kapoor (S)

Maulana Azad medical College and Associated Loknayak Hospital, New Delhi, 110002, India.

Seema Bhatwadekar (S)

Sterling Hospital, Ahmedabad, 380052, India.

Frenny Sheth (F)

FRIGE's Institute of Human Genetics, FRIGE House, Jodhpur Gam Road, Satellite, Ahmedabad, Gujarat, 380015, India.

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