Deleterious Variation in BRSK2 Associates with a Neurodevelopmental Disorder.
Adolescent
Autistic Disorder
/ genetics
Child
Child Behavior Disorders
/ genetics
Child, Preschool
Developmental Disabilities
/ genetics
Exome
Female
Gene Deletion
Genetic Predisposition to Disease
Genetic Variation
Heterozygote
Humans
Intellectual Disability
/ genetics
Male
Motor Skills Disorders
/ genetics
Mutation
Neurodevelopmental Disorders
/ genetics
Phenotype
Protein Serine-Threonine Kinases
/ genetics
Exome Sequencing
Young Adult
BRSK2
Mendelian disease
clinical sequencing
de novo
developmental delay
exome
genome
intellectual disability
Journal
American journal of human genetics
ISSN: 1537-6605
Titre abrégé: Am J Hum Genet
Pays: United States
ID NLM: 0370475
Informations de publication
Date de publication:
04 04 2019
04 04 2019
Historique:
received:
28
11
2018
accepted:
01
02
2019
pubmed:
19
3
2019
medline:
6
2
2020
entrez:
19
3
2019
Statut:
ppublish
Résumé
Developmental delay and intellectual disability (DD and ID) are heterogeneous phenotypes that arise in many rare monogenic disorders. Because of this rarity, developing cohorts with enough individuals to robustly identify disease-associated genes is challenging. Social-media platforms that facilitate data sharing among sequencing labs can help to address this challenge. Through one such tool, GeneMatcher, we identified nine DD- and/or ID-affected probands with a rare, heterozygous variant in the gene encoding the serine/threonine-protein kinase BRSK2. All probands have a speech delay, and most present with intellectual disability, motor delay, behavioral issues, and autism. Six of the nine variants are predicted to result in loss of function, and computational modeling predicts that the remaining three missense variants are damaging to BRSK2 structure and function. All nine variants are absent from large variant databases, and BRSK2 is, in general, relatively intolerant to protein-altering variation among humans. In all six probands for whom parents were available, the mutations were found to have arisen de novo. Five of these de novo variants were from cohorts with at least 400 sequenced probands; collectively, the cohorts span 3,429 probands, and the observed rate of de novo variation in these cohorts is significantly higher than the estimated background-mutation rate (p = 2.46 × 10
Identifiants
pubmed: 30879638
pii: S0002-9297(19)30047-3
doi: 10.1016/j.ajhg.2019.02.002
pmc: PMC6451696
pii:
doi:
Substances chimiques
Brsk2 protein, human
EC 2.7.11.1
Protein Serine-Threonine Kinases
EC 2.7.11.1
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
701-708Subventions
Organisme : NIEHS NIH HHS
ID : K01 ES025435
Pays : United States
Organisme : NHGRI NIH HHS
ID : UM1 HG007301
Pays : United States
Informations de copyright
Copyright © 2019 American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.
Références
Nat Commun. 2017 May 31;8:15637
pubmed: 28561066
Science. 2005 Feb 11;307(5711):929-32
pubmed: 15705853
Genome Med. 2017 Nov 27;9(1):101
pubmed: 29179772
PLoS Genet. 2013;9(8):e1003709
pubmed: 23990802
EMBO J. 2004 Feb 25;23(4):833-43
pubmed: 14976552
Hum Genet. 2016 Mar;135(3):359-62
pubmed: 26742503
Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13571-6
pubmed: 12271141
Genome Med. 2017 May 30;9(1):43
pubmed: 28554332
Am J Hum Genet. 2016 Jan 7;98(1):58-74
pubmed: 26749308
Ann Neurol. 2015 Apr;77(4):720-5
pubmed: 25599672
Nat Genet. 2014 Mar;46(3):310-5
pubmed: 24487276
J Child Psychol Psychiatry. 2009 Jan;50(1-2):87-98
pubmed: 19220592
Nat Neurosci. 2016 Sep;19(9):1194-6
pubmed: 27479843
Brain Dev. 2018 Jan;40(1):36-41
pubmed: 28774669
Nat Genet. 2014 Sep;46(9):944-50
pubmed: 25086666
Nat Commun. 2015 Dec 02;6:8953
pubmed: 26626945
Exp Neurobiol. 2013 Sep;22(3):133-42
pubmed: 24167408
Cell. 2017 Oct 19;171(3):710-722.e12
pubmed: 28965761
Nature. 2016 Aug 17;536(7616):285-91
pubmed: 27535533
Nature. 2014 Jul 17;511(7509):344-7
pubmed: 24896178
Oncotarget. 2017 Jul 4;8(27):44669-44681
pubmed: 28591720
Hum Mutat. 2015 Oct;36(10):915-21
pubmed: 26295439
Nature. 2017 Feb 23;542(7642):433-438
pubmed: 28135719
Genet Med. 2015 May;17(5):405-24
pubmed: 25741868
Genet Med. 2009 Feb;11(2):111-7
pubmed: 19265751
Nat Genet. 2013 Jun;45(6):580-5
pubmed: 23715323
Neuron. 2006 May 4;50(3):377-88
pubmed: 16675393
Curr Protoc Hum Genet. 2017 Oct 18;95:9.31.1-9.31.15
pubmed: 29044468
Trends Biochem Sci. 2000 Sep;25(9):448-53
pubmed: 10973059
Nature. 2014 Nov 13;515(7526):216-21
pubmed: 25363768
Hum Mutat. 2015 Oct;36(10):928-30
pubmed: 26220891
Nat Commun. 2014 Nov 24;5:5595
pubmed: 25418537
Proc Natl Acad Sci U S A. 2015 Apr 28;112(17):5473-8
pubmed: 25827230
J Mol Model. 2017 Mar;23(3):75
pubmed: 28204942
Front Psychiatry. 2016 Aug 22;7:142
pubmed: 27597832