The complete plastid genome sequence of the enigmatic moss, Takakia lepidozioides (Takakiopsida, Bryophyta): evolutionary perspectives on the largest collection of genes in mosses and the intensive RNA editing.
Bryophyta
/ classification
Chloroplast Proteins
/ classification
Chloroplasts
/ genetics
Evolution, Molecular
Genes, Chloroplast
/ genetics
Genetic Variation
Genome, Plastid
/ genetics
Mutation
Phylogeny
Plant Leaves
/ genetics
RNA Editing
RNA-Seq
/ methods
Rhizome
/ genetics
Species Specificity
Whole Genome Sequencing
/ methods
Bryophytes
Monoplastidy
Moss
Plastid genome
RNA editing
Takakia lepidozioides
Journal
Plant molecular biology
ISSN: 1573-5028
Titre abrégé: Plant Mol Biol
Pays: Netherlands
ID NLM: 9106343
Informations de publication
Date de publication:
Nov 2021
Nov 2021
Historique:
received:
30
11
2020
accepted:
03
11
2021
pubmed:
25
11
2021
medline:
21
12
2021
entrez:
24
11
2021
Statut:
ppublish
Résumé
Complete chloroplast genome sequence of a moss, Takakia lepidozioides (Takakiopsida) is reported. The largest collection of genes in mosses and the intensive RNA editing were discussed from evolutionary perspectives. We assembled the entire plastid genome sequence of Takakia lepidozioides (Takakiopsida), emerging from the first phylogenetic split among extant mosses. The genome sequences were assembled into a circular molecule 149,016 bp in length, with a quadripartite structure comprising a large and a small single-copy region separated by inverted repeats. It contained 88 genes coding for proteins, 32 for tRNA, four for rRNA, two open reading frames, and at least one pseudogene (tufA). This is the largest number of genes of all sequenced plastid genomes in mosses and Takakia is the only moss that retains the seven coding genes ccsA, cysA, cysT, petN rpoA, rps16 and trnP
Identifiants
pubmed: 34817767
doi: 10.1007/s11103-021-01214-z
pii: 10.1007/s11103-021-01214-z
doi:
Substances chimiques
Chloroplast Proteins
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
431-449Subventions
Organisme : Japan Society for the Promotion of Science
ID : 26291081
Organisme : Japan Society for the Promotion of Science
ID : 23370045
Informations de copyright
© 2021. The Author(s), under exclusive licence to Springer Nature B.V.
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